INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZIM3-SRR5197046.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIM3-SRR5197046/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.85768699646 s
Creating peak regions... Creating peak regions took 77.375743866 s
Estimating background... Estimating background took 64.9453830719 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.61714792252 s
Creating peak regions... Creating peak regions took 41.2831168175 s
Estimating background... Estimating background took 26.7699699402 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.80635094643 s
Creating peak regions... Creating peak regions took 41.2611088753 s
Estimating background... Estimating background took 26.5346448421 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZIM3-SRR5197046.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIM3-SRR5197046/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.87708592415 s
Creating peak regions... Creating peak regions took 75.2224700451 s
Estimating background... Estimating background took 62.8026900291 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.39917492867 s
Creating peak regions... Creating peak regions took 40.1257789135 s
Estimating background... Estimating background took 25.6749989986 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.63291192055 s
Creating peak regions... Creating peak regions took 39.7497160435 s
Estimating background... Estimating background took 26.3418161869 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.71635603905 s
Creating peak regions... Creating peak regions took 39.8991611004 s
Estimating background... Estimating background took 27.8661780357 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.51863098145 s
Creating peak regions... Creating peak regions took 34.7807891369 s
Estimating background... Estimating background took 32.790104866 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.42974710464 s
Creating peak regions... Creating peak regions took 31.5233619213 s
Estimating background... Estimating background took 18.0899009705 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.33722305298 s
Creating peak regions... Creating peak regions took 29.6703519821 s
Estimating background... Estimating background took 17.8786010742 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.12568998337 s
Creating peak regions... Creating peak regions took 26.5736031532 s
Estimating background... Estimating background took 15.699477911 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.45188307762 s
Creating peak regions... Creating peak regions took 25.2719869614 s
Estimating background... Estimating background took 20.4653410912 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.97655105591 s
Creating peak regions... Creating peak regions took 23.6885380745 s
Estimating background... Estimating background took 14.6543700695 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.65090703964 s
Creating peak regions... Creating peak regions took 17.6325449944 s
Estimating background... Estimating background took 12.0424978733 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 6.02006793022 s
Creating peak regions... Creating peak regions took 75.6165649891 s
Estimating background... Estimating background took 47.5751559734 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.84273004532 s
Creating peak regions... Creating peak regions took 20.7382760048 s
Estimating background... Estimating background took 14.3233828545 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.14312601089 s
Creating peak regions... Creating peak regions took 14.5922698975 s
Estimating background... Estimating background took 8.14715313911 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.38245606422 s
Creating peak regions... Creating peak regions took 15.9087491035 s
Estimating background... Estimating background took 11.3901939392 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.61355614662 s
Creating peak regions... Creating peak regions took 58.4682469368 s
Estimating background... Estimating background took 36.5386641026 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.45413303375 s
Creating peak regions... Creating peak regions took 56.6250920296 s
Estimating background... Estimating background took 31.1740801334 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.01605701447 s
Creating peak regions... Creating peak regions took 54.7153689861 s
Estimating background... Estimating background took 35.8926877975 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 5.08437085152 s
Creating peak regions... Creating peak regions took 52.1628830433 s
Estimating background... Estimating background took 39.1218550205 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.26513314247 s
Creating peak regions... Creating peak regions took 48.3705918789 s
Estimating background... Estimating background took 32.0068371296 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.82922291756 s
Creating peak regions... Creating peak regions took 43.9949610233 s
Estimating background... Estimating background took 26.7433898449 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.24448299408 s
Creating peak regions... Creating peak regions took 41.969974041 s
Estimating background... Estimating background took 24.9688789845 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.115731954575 s
Creating peak regions... Creating peak regions took 0.212069034576 s
Estimating background... Estimating background took 0.694656848907 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.70083808899 s
Creating peak regions... Creating peak regions took 49.3141608238 s
Estimating background... Estimating background took 35.6307418346 s


Processing ZIM3-SRR5197046.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.189198970795 s
Creating peak regions... Creating peak regions took 15.3544659615 s
Estimating background... Estimating background took 0.799386024475 s