INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZIK1-SRR5197044.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIK1-SRR5197044/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.55270600319 s
Creating peak regions... Creating peak regions took 61.26217103 s
Estimating background... Estimating background took 25.9444031715 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.74212288857 s
Creating peak regions... Creating peak regions took 31.9663150311 s
Estimating background... Estimating background took 10.5346660614 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.70950889587 s
Creating peak regions... Creating peak regions took 32.3480849266 s
Estimating background... Estimating background took 10.9420189857 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... INPUT PARAMETERS:
Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZIK1-SRR5197044.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZIK1-SRR5197044/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done!

Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 4.29340982437 s
Creating peak regions... Creating peak regions took 70.0145578384 s
Estimating background... Estimating background took 28.4345538616 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.0328540802 s
Creating peak regions... Creating peak regions took 36.4721410275 s
Estimating background... Estimating background took 12.1259040833 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.13050103188 s
Creating peak regions... Creating peak regions took 36.484153986 s
Estimating background... Estimating background took 11.6395699978 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.32711601257 s
Creating peak regions... Creating peak regions took 38.9615159035 s
Estimating background... Estimating background took 12.7060949802 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.89359498024 s
Creating peak regions... Creating peak regions took 32.21332407 s
Estimating background... Estimating background took 13.5952689648 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.52907299995 s
Creating peak regions... Creating peak regions took 29.1269259453 s
Estimating background... Estimating background took 8.33013010025 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.43132400513 s
Creating peak regions... Creating peak regions took 29.3114140034 s
Estimating background... Estimating background took 9.04434013367 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.53892707825 s
Creating peak regions... Creating peak regions took 26.2552399635 s
Estimating background... Estimating background took 8.90901398659 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.68286204338 s
Creating peak regions... Creating peak regions took 24.8486478329 s
Estimating background... Estimating background took 10.5264909267 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.1457631588 s
Creating peak regions... Creating peak regions took 22.5123047829 s
Estimating background... Estimating background took 6.50338292122 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.21083402634 s
Creating peak regions... Creating peak regions took 16.0698540211 s
Estimating background... Estimating background took 7.39742088318 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.60628795624 s
Creating peak regions... Creating peak regions took 64.7474751472 s
Estimating background... Estimating background took 20.5842440128 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.33958292007 s
Creating peak regions... Creating peak regions took 18.6300530434 s
Estimating background... Estimating background took 7.53081607819 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.654136180878 s
Creating peak regions... Creating peak regions took 13.7870900631 s
Estimating background... Estimating background took 4.1596429348 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.06565904617 s
Creating peak regions... Creating peak regions took 15.0344250202 s
Estimating background... Estimating background took 6.72607707977 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.92749810219 s
Creating peak regions... Creating peak regions took 55.3432729244 s
Estimating background... Estimating background took 15.5218570232 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.41351294518 s
Creating peak regions... Creating peak regions took 51.7183477879 s
Estimating background... Estimating background took 12.5174160004 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.903632164 s
Creating peak regions... Creating peak regions took 53.3043961525 s
Estimating background... Estimating background took 15.7148609161 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 3.10948491096 s
Creating peak regions... Creating peak regions took 48.4243831635 s
Estimating background... Estimating background took 17.8885159492 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.66641998291 s
Creating peak regions... Creating peak regions took 44.8324179649 s
Estimating background... Estimating background took 15.5100328922 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.32844805717 s
Creating peak regions... Creating peak regions took 40.5813930035 s
Estimating background... Estimating background took 11.455188036 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 1.99743294716 s
Creating peak regions... Creating peak regions took 38.1649689674 s
Estimating background... Estimating background took 11.3423161507 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.0924439430237 s
Creating peak regions... Creating peak regions took 0.179393053055 s
Estimating background... Estimating background took 0.685184955597 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 2.82584095001 s
Creating peak regions... Creating peak regions took 43.9436569214 s
Estimating background... Estimating background took 16.5424630642 s


Processing ZIK1-SRR5197044.hg20-male.36mers.unique.bam
Reading in data... Reading data took 0.116632938385 s
Creating peak regions... Creating peak regions took 14.5366749763 s
Estimating background... Estimating background took 0.685512065887 s