INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38.chrom.sizes', e4='PeakXus', fastq='ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP57-rep2-SRR5197040/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.52432990074 s Creating peak regions... Creating peak regions took 68.1516489983 s Estimating background... Estimating background took 34.1147871017 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.30756521225 s Creating peak regions... Creating peak regions took 34.4029839039 s Estimating background... Estimating background took 15.2628312111 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.50621318817 s Creating peak regions... Creating peak regions took 35.25198102 s Estimating background... Estimating background took 14.8496339321 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... INPUT PARAMETERS: Namespace(B2=None, N4=1000, N6=1000, S4=1, UMIs=None, adapters1=None, b3=0.05, blacklist='/oak/stanford/groups/akundaje/marinovg/genomes/blacklists/hg38.blacklist.bed', center6=0, chromnames='/oak/stanford/groups/akundaje/marinovg/genomes/hg20/hg38-male.chrom.sizes', e4='PeakXus', fastq='ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam', genome2=None, k4=4, l3=5, l6='PeakXus', l_l3=60, m4=10, m5=20, m6=100, matrixhits=None, maxw7=50, minw7=4, ml4=17, ms4=-8, n3=1, n4=1, o5=1, outdir='ZFP57-rep2-SRR5197040/peakXus/', p3=1.0, p7=1, q2=20, s3=1, skip0=0, t2=1, title5='PeakXus', verbosity=1, w3=5, w4=100, wg7=None)Testing that input files exist...done! Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 5.34165096283 s Creating peak regions... Creating peak regions took 64.7262580395 s Estimating background... Estimating background took 34.4629869461 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.38752603531 s Creating peak regions... Creating peak regions took 34.7284431458 s Estimating background... Estimating background took 14.9942409992 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.42549991608 s Creating peak regions... Creating peak regions took 34.2382369041 s Estimating background... Estimating background took 15.0011870861 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.49287605286 s Creating peak regions... Creating peak regions took 33.8149950504 s Estimating background... Estimating background took 14.9784679413 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.12449193001 s Creating peak regions... Creating peak regions took 30.6685669422 s Estimating background... Estimating background took 13.2066438198 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.59823012352 s Creating peak regions... Creating peak regions took 26.416574955 s Estimating background... Estimating background took 10.0342409611 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.59522104263 s Creating peak regions... Creating peak regions took 25.7156701088 s Estimating background... Estimating background took 10.4827060699 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.95927906036 s Creating peak regions... Creating peak regions took 23.09988904 s Estimating background... Estimating background took 13.307543993 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.0808660984 s Creating peak regions... Creating peak regions took 21.0046389103 s Estimating background... Estimating background took 14.6398630142 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.24608802795 s Creating peak regions... Creating peak regions took 19.9492709637 s Estimating background... Estimating background took 6.86628198624 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.66285800934 s Creating peak regions... Creating peak regions took 15.6190629005 s Estimating background... Estimating background took 13.1123549938 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.94395184517 s Creating peak regions... Creating peak regions took 64.3262190819 s Estimating background... Estimating background took 22.321778059 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.42496609688 s Creating peak regions... Creating peak regions took 17.0756552219 s Estimating background... Estimating background took 8.83645987511 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.765142917633 s Creating peak regions... Creating peak regions took 12.6709699631 s Estimating background... Estimating background took 4.65486001968 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 1.23076200485 s Creating peak regions... Creating peak regions took 14.1225209236 s Estimating background... Estimating background took 10.2836790085 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.37059998512 s Creating peak regions... Creating peak regions took 49.730561018 s Estimating background... Estimating background took 17.4426038265 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.50491309166 s Creating peak regions... Creating peak regions took 46.5999290943 s Estimating background... Estimating background took 13.6112260818 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.97017598152 s Creating peak regions... Creating peak regions took 45.2819330692 s Estimating background... Estimating background took 17.4651858807 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.26775884628 s Creating peak regions... Creating peak regions took 44.7465388775 s Estimating background... Estimating background took 19.4778320789 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 3.75456905365 s Creating peak regions... Creating peak regions took 41.0819821358 s Estimating background... Estimating background took 19.2664349079 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.31102991104 s Creating peak regions... Creating peak regions took 39.1456179619 s Estimating background... Estimating background took 12.8988051414 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.07669210434 s Creating peak regions... Creating peak regions took 34.7007980347 s Estimating background... Estimating background took 13.2345018387 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.0983791351318 s Creating peak regions... Creating peak regions took 0.152506113052 s Estimating background... Estimating background took 0.533854961395 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 2.73507118225 s Creating peak regions... Creating peak regions took 39.7751259804 s Estimating background... Estimating background took 15.7816960812 s Processing ZFP57-rep2-SRR5197040.hg20-male.36mers.unique.bam Reading in data... Reading data took 0.109190940857 s Creating peak regions... Creating peak regions took 12.9918370247 s Estimating background... Estimating background took 0.444833040237 s