============================================== 2018-06-06 14:34:25 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RbKO_villi_E2f3-GSM1606986/aligned.36mers.unique.bam --out RbKO_villi_E2f3-GSM1606986/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:34:25 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RbKO_villi_Myc-GSM1606987/aligned.36mers.unique.bam --out RbKO_villi_Myc-GSM1606987/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:35:21 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RbKO_crypts_Myc-GSM1606985/aligned.36mers.unique.bam --out RbKO_crypts_Myc-GSM1606985/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:36:20 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt RbKO_crypts_E2f3-GSM1606984/aligned.36mers.unique.bam --out RbKO_crypts_E2f3-GSM1606984/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:36:56 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt control_villi_E2f3-GSM1606990/aligned.36mers.unique.bam --out control_villi_E2f3-GSM1606990/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:37:17 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt control_crypts_E2f3-GSM1606988/aligned.36mers.unique.bam --out control_crypts_E2f3-GSM1606988/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:37:18 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt control_crypts_Myc-GSM1606989/aligned.36mers.unique.bam --out control_crypts_Myc-GSM1606989/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:37:31 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt control_villi_Myc-GSM1606991/aligned.36mers.unique.bam --out control_villi_Myc-GSM1606991/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 43315407 HitCounts: 4.9457115E7 Original read count stats: _IP Bases: 44079266 HitCounts: 4.9904989E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 15 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 15 reads. The genome is segmented into 4072104 regions for analysis. The genome is segmented into 3962824 regions for analysis. Running with 4 threads ... Running with 4 threads ... Original read count stats: _IP Bases: 54146009 HitCounts: 6.6185707E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. The genome is segmented into 4192565 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 50543311 HitCounts: 8.6651358E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. --------------------------- Events discovered Significant: 7042 Insignificant: 337 Filtered: 1419 Finish binding event prediction: 4.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 2346 Insignificant: 282 Filtered: 206 Finish binding event prediction: 4.7m Refine read distribution from 1689 binding events. Running with 4 threads ... The genome is segmented into 3806312 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 71488508 HitCounts: 8.2498859E7 Original read count stats: _IP Bases: 64765932 HitCounts: 7.5035174E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 21 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 20 reads. The genome is segmented into 4251762 regions for analysis. The genome is segmented into 4259648 regions for analysis. Running with 4 threads ... Running with 4 threads ... Original read count stats: _IP Bases: 68107799 HitCounts: 8.1332081E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 20 reads. Original read count stats: _IP Bases: 72245969 HitCounts: 9.2155862E7 The genome is segmented into 4262391 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 14286 Insignificant: 362 Filtered: 3666 Finish binding event prediction: 5.9m Refine read distribution from 2000 binding events. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 21 reads. --------------------------- Events discovered Significant: 13973 Insignificant: 4561 Filtered: 41 Finish binding event prediction: 3.6m Refine read distribution from 2000 binding events. The genome is segmented into 4251873 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 3578 Insignificant: 3506 Filtered: 62 Finish binding event prediction: 3.8m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 32541 Insignificant: 5534 Filtered: 34 Finish binding event prediction: 3.7m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 151212 Insignificant: 822 Filtered: 23589 Finish binding event prediction: 8.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 11565 Insignificant: 330 Filtered: 2769 Finish binding event prediction: 7.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 3692 Insignificant: 326 Filtered: 599 Finish binding event prediction: 7.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 3164 Insignificant: 259 Filtered: 442 Finish binding event prediction: 8.7m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 199431 Insignificant: 26423 Filtered: 332 Finish binding event prediction: 5.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 17638 Insignificant: 385 Filtered: 4286 Finish binding event prediction: 10.3m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 28810 Insignificant: 5808 Filtered: 28 Finish binding event prediction: 7.3m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 8105 Insignificant: 2614 Filtered: 29 Finish binding event prediction: 6.6m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6481 Insignificant: 2731 Filtered: 63 Finish binding event prediction: 7.5m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 40373 Insignificant: 8107 Filtered: 25 Finish binding event prediction: 7.7m Refine read distribution from 2000 binding events.