============================================== 2018-06-06 14:26:14 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Isl1_day6_rep1-GSM2098375/aligned.36mers.unique.bam --out ChIP_exo_Isl1_day6_rep1-GSM2098375/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:19 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Onecut1_day5-GSM2098377/aligned.36mers.unique.bam --out ChIP_exo_Onecut1_day5-GSM2098377/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:26 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Onecut1_day6-GSM2098378/aligned.36mers.unique.bam --out ChIP_exo_Onecut1_day6-GSM2098378/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:28 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Isl1_day5_rep2-GSM2098374/aligned.36mers.unique.bam --out ChIP_exo_Isl1_day5_rep2-GSM2098374/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Lhx3_iNIL-GSM2098379/aligned.36mers.unique.bam --out ChIP_exo_Lhx3_iNIL-GSM2098379/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Isl1_day5_rep1-GSM2098373/aligned.36mers.unique.bam --out ChIP_exo_Isl1_day5_rep1-GSM2098373/aligned.36mers.unique.GPS ============================================== 2018-06-06 14:26:36 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt ChIP_exo_Isl1_day6_rep2-GSM2098376/aligned.36mers.unique.bam --out ChIP_exo_Isl1_day6_rep2-GSM2098376/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 1022261 HitCounts: 1.8460821E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 2 reads. Original read count stats: _IP Bases: 3000304 HitCounts: 9318020.0 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 117032 regions for analysis. Running with 4 threads ... The genome is segmented into 226232 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 2575950 HitCounts: 1.1540935E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 183772 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 3162961 HitCounts: 1.529205E7 Original read count stats: _IP Bases: 2720971 HitCounts: 1.7061474E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 3 reads. The genome is segmented into 107619 regions for analysis. Running with 4 threads ... The genome is segmented into 188751 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 4414373 HitCounts: 1.6857138E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 244501 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 7779978 HitCounts: 1.1746831E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 6 reads. The genome is segmented into 333659 regions for analysis. --------------------------- Events discovered Significant: 15060 Insignificant: 26721 Filtered: 4589 Finish binding event prediction: 1.0m Refine read distribution from 2000 binding events. Running with 4 threads ... Running with 4 threads ... --------------------------- Events discovered Significant: 19021 Insignificant: 33768 Filtered: 668 Finish binding event prediction: 15.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6367 Insignificant: 17026 Filtered: 3081 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 10654 Insignificant: 1435 Filtered: 1781 Finish binding event prediction: 1.2m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 83021 Insignificant: 5068 Filtered: 6762 Finish binding event prediction: 1.9m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6307 Insignificant: 400 Filtered: 1021 Finish binding event prediction: 1.9m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6527 Insignificant: 43618 Filtered: 247 Finish binding event prediction: 55.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 75253 Insignificant: 35442 Filtered: 2981 Finish binding event prediction: 31.9s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 12888 Insignificant: 9483 Filtered: 2791 Finish binding event prediction: 2.3m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 8927 Insignificant: 14405 Filtered: 160 Finish binding event prediction: 50.5s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 7262 Insignificant: 6471 Filtered: 215 Finish binding event prediction: 1.0m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 7622 Insignificant: 38483 Filtered: 319 Finish binding event prediction: 51.4s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 76064 Insignificant: 547 Filtered: 6965 Finish binding event prediction: 2.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 82473 Insignificant: 12417 Filtered: 885 Finish binding event prediction: 55.8s Refine read distribution from 2000 binding events.