============================================== 2018-06-06 16:29:20 ============================================== 2018-06-06 16:29:20 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_IRF4_rep2-GSM2259189/aligned.36mers.unique.bam --out exo_IRF4_rep2-GSM2259189/aligned.36mers.unique.GPS Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_BATF_rep4-GSM2259187/aligned.36mers.unique.bam --out exo_BATF_rep4-GSM2259187/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:29:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_BATF_rep1-GSM2259184/aligned.36mers.unique.bam --out exo_BATF_rep1-GSM2259184/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:29:34 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_BATF_rep2-GSM2259185/aligned.36mers.unique.bam --out exo_BATF_rep2-GSM2259185/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:29:51 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_BATF_rep3-GSM2259186/aligned.36mers.unique.bam --out exo_BATF_rep3-GSM2259186/aligned.36mers.unique.GPS ============================================== 2018-06-06 16:30:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt exo_IRF4_rep1-GSM2259188/aligned.36mers.unique.bam --out exo_IRF4_rep1-GSM2259188/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 5124123 HitCounts: 1.6745031E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 4 reads. The genome is segmented into 319963 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 7043258 HitCounts: 1.4695812E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 5 reads. The genome is segmented into 423483 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 11702133 HitCounts: 1.5977752E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 844703 regions for analysis. Running with 4 threads ... Original read count stats: Original read count stats: _IP Bases: 10369913 HitCounts: 2.2418201E7 _IP Bases: 13770889 HitCounts: 1.8786767E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 6 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. --------------------------- Events discovered Significant: 18116 Insignificant: 4208 Filtered: 2320 Finish binding event prediction: 1.3m Refine read distribution from 2000 binding events. Running with 4 threads ... The genome is segmented into 774428 regions for analysis. Running with 4 threads ... The genome is segmented into 1201848 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 13080831 HitCounts: 1.8725692E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 7 reads. The genome is segmented into 1031882 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 14457 Insignificant: 21570 Filtered: 387 Finish binding event prediction: 39.6s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 13132 Insignificant: 1805 Filtered: 2509 Finish binding event prediction: 2.6m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 16269 Insignificant: 1144 Filtered: 3026 Finish binding event prediction: 1.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 15095 Insignificant: 8490 Filtered: 41 Finish binding event prediction: 44.6s Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 24124 Insignificant: 837 Filtered: 4702 Finish binding event prediction: 2.2m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 11319 Insignificant: 656 Filtered: 2898 Running with 4 threads ... Finish binding event prediction: 3.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 15586 Insignificant: 944 Filtered: 3794 Finish binding event prediction: 2.8m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 19653 Insignificant: 8301 Filtered: 43 Finish binding event prediction: 1.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 19612 Insignificant: 6011 Filtered: 9 Finish binding event prediction: 1.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 29369 Insignificant: 8925 Filtered: 61 Finish binding event prediction: 1.4m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 22253 Insignificant: 7392 Filtered: 7 Finish binding event prediction: 1.4m Refine read distribution from 2000 binding events.