============================================== 2018-06-06 13:21:28 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt LN95_V7_ChIPexo-Rep1-GSM2643245/aligned.36mers.unique.bam --out LN95_V7_ChIPexo-Rep1-GSM2643245/aligned.36mers.unique.GPS ============================================== 2018-06-06 13:21:34 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_V7_ChIPexo-Rep2-GSM2643240/aligned.36mers.unique.bam --out 22RV1_V7_ChIPexo-Rep2-GSM2643240/aligned.36mers.unique.GPS ============================================== 2018-06-06 13:21:46 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_C19_ChIPexo-Rep2-GSM2643242/aligned.36mers.unique.bam --out 22RV1_C19_ChIPexo-Rep2-GSM2643242/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 23839785 HitCounts: 3.6857543E7 ============================================== 2018-06-06 13:22:33 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_C19_ChIPexo-Rep1-GSM2643241/aligned.36mers.unique.bam --out 22RV1_C19_ChIPexo-Rep1-GSM2643241/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 29489156 HitCounts: 3.4992637E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 9 reads. ============================================== 2018-06-06 13:22:42 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_HoxB13_ChIPexo-Rep2-GSM2643244/aligned.36mers.unique.bam --out 22RV1_HoxB13_ChIPexo-Rep2-GSM2643244/aligned.36mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. ============================================== 2018-06-06 13:22:45 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_V7_ChIPexo-Rep1-GSM2643239/aligned.36mers.unique.bam --out 22RV1_V7_ChIPexo-Rep1-GSM2643239/aligned.36mers.unique.GPS The genome is segmented into 2683724 regions for analysis. Running with 4 threads ... ============================================== 2018-06-06 13:22:52 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt LN95_C19_ChIPexo-Rep1-GSM2643247/aligned.36mers.unique.bam --out LN95_C19_ChIPexo-Rep1-GSM2643247/aligned.36mers.unique.GPS ============================================== 2018-06-06 13:22:55 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt 22RV1_HoxB13_ChIPexo-Rep1-GSM2643243/aligned.36mers.unique.bam --out 22RV1_HoxB13_ChIPexo-Rep1-GSM2643243/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 34948733 HitCounts: 3.9194009E7 The genome is segmented into 3331586 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. The genome is segmented into 3762369 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 31777363 HitCounts: 5.7166614E7 Original read count stats: _IP Bases: 42352058 HitCounts: 5.1299943E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 11 reads. Original read count stats: _IP Bases: 45389783 HitCounts: 5.1231038E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 13 reads. Original read count stats: _IP Bases: 47847091 HitCounts: 5.3221446E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. The genome is segmented into 3417725 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 15 reads. The genome is segmented into 4027948 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 50399474 HitCounts: 5.7360091E7 The genome is segmented into 3267254 regions for analysis. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 15 reads. The genome is segmented into 4315463 regions for analysis. Running with 4 threads ... The genome is segmented into 3435321 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 1948 Insignificant: 366 Filtered: 113 Finish binding event prediction: 3.5m Refine read distribution from 971 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 2616 Insignificant: 769 Filtered: 284 Finish binding event prediction: 4.1m Refine read distribution from 1330 binding events. Running with 4 threads ... ============================================== 2018-06-06 13:27:02 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt LN95_HoxB13_ChIPexo-Rep2-GSM2643250/aligned.36mers.unique.bam --out LN95_HoxB13_ChIPexo-Rep2-GSM2643250/aligned.36mers.unique.GPS --------------------------- Events discovered Significant: 4737 Insignificant: 369 Filtered: 1065 Finish binding event prediction: 3.8m Refine read distribution from 2000 binding events. Running with 4 threads ... ============================================== 2018-06-06 13:27:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt LN95_HoxB13_ChIPexo-Rep1-GSM2643249/aligned.36mers.unique.bam --out LN95_HoxB13_ChIPexo-Rep1-GSM2643249/aligned.36mers.unique.GPS ============================================== 2018-06-06 13:27:48 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt LN95_C19_ChIPexo-Rep2-GSM2643248/aligned.36mers.unique.bam --out LN95_C19_ChIPexo-Rep2-GSM2643248/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 36791425 HitCounts: 4.0968742E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 12 reads. ============================================== 2018-06-06 13:28:46 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A3_V7_ChIPexo-GSM2643268/aligned.36mers.unique.bam --out A3_V7_ChIPexo-GSM2643268/aligned.36mers.unique.GPS The genome is segmented into 3171904 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 40176321 HitCounts: 4.5047679E7 --------------------------- Events discovered Significant: 1360 Insignificant: 3757 Filtered: 116 Finish binding event prediction: 2.7m Refine read distribution from 837 binding events. At Poisson p-value 1.0e-03, in a 301bp window, expect 13 reads. --------------------------- Events discovered Significant: 1952 Insignificant: 8204 Filtered: 162 Finish binding event prediction: 2.3m Refine read distribution from 1142 binding events. ============================================== 2018-06-06 13:29:17 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A31_V7_ChIPexo-GSM2643266/aligned.36mers.unique.bam --out A31_V7_ChIPexo-GSM2643266/aligned.36mers.unique.GPS Original read count stats: _IP Bases: 44898672 HitCounts: 5.0471696E7 --------------------------- Events discovered Significant: 2950 Insignificant: 494 Filtered: 291 Finish binding event prediction: 5.0m Refine read distribution from 1458 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 6473 Insignificant: 407 Filtered: 1390 Finish binding event prediction: 4.9m Refine read distribution from 2000 binding events. Running with 4 threads ... The genome is segmented into 3363532 regions for analysis. At Poisson p-value 1.0e-03, in a 301bp window, expect 14 reads. Running with 4 threads ... ============================================== 2018-06-06 13:29:53 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A3_HoxB13_ChIPexo-GSM2643267/aligned.36mers.unique.bam --out A3_HoxB13_ChIPexo-GSM2643267/aligned.36mers.unique.GPS --------------------------- Events discovered Significant: 6870 Insignificant: 6814 Filtered: 23 Finish binding event prediction: 2.6m Refine read distribution from 2000 binding events. ============================================== 2018-06-06 13:29:53 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A17_V7_ChIPexo-GSM2643264/aligned.36mers.unique.bam --out A17_V7_ChIPexo-GSM2643264/aligned.36mers.unique.GPS The genome is segmented into 4267696 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 61112309 HitCounts: 6.4519002E7 --------------------------- Events discovered Significant: 4117 Insignificant: 380 Filtered: 706 Finish binding event prediction: 5.6m Refine read distribution from 2000 binding events. Running with 4 threads ... At Poisson p-value 1.0e-03, in a 301bp window, expect 17 reads. ============================================== 2018-06-06 13:30:57 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A17_HoxB13_ChIPexo-GSM2643263/aligned.36mers.unique.bam --out A17_HoxB13_ChIPexo-GSM2643263/aligned.36mers.unique.GPS The genome is segmented into 4704413 regions for analysis. Running with 4 threads ... Original read count stats: _IP Bases: 65671559 HitCounts: 7.0497146E7 ============================================== 2018-06-06 13:31:29 Options: --f SAM --d /oak/stanford/groups/akundaje/marinovg/programs/gem.v3.2/Read_Distribution_ChIP-exo.txt --expt A31_HoxB13_ChIPexo-GSM2643265/aligned.36mers.unique.bam --out A31_HoxB13_ChIPexo-GSM2643265/aligned.36mers.unique.GPS At Poisson p-value 1.0e-03, in a 301bp window, expect 18 reads. The genome is segmented into 4706188 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 2213 Insignificant: 4656 Filtered: 220 Finish binding event prediction: 2.7m Refine read distribution from 1193 binding events. Original read count stats: _IP Bases: 80197271 HitCounts: 8.4747468E7 --------------------------- Events discovered Significant: 8375 Insignificant: 7791 Filtered: 28 Finish binding event prediction: 3.0m Refine read distribution from 2000 binding events. Original read count stats: _IP Bases: 72690314 HitCounts: 7.6742131E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 21 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 19 reads. --------------------------- Events discovered Significant: 18116 Insignificant: 446 Filtered: 4585 Finish binding event prediction: 8.4m Refine read distribution from 2000 binding events. Running with 4 threads ... The genome is segmented into 4873407 regions for analysis. The genome is segmented into 4798764 regions for analysis. Running with 4 threads ... Running with 4 threads ... Original read count stats: _IP Bases: 87653483 HitCounts: 9.1727213E7 Original read count stats: _IP Bases: 87180912 HitCounts: 9.1580806E7 At Poisson p-value 1.0e-03, in a 301bp window, expect 22 reads. At Poisson p-value 1.0e-03, in a 301bp window, expect 22 reads. The genome is segmented into 4899219 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 7382 Insignificant: 4777 Filtered: 20 Finish binding event prediction: 4.6m Refine read distribution from 2000 binding events. The genome is segmented into 4914672 regions for analysis. Running with 4 threads ... --------------------------- Events discovered Significant: 3962 Insignificant: 326 Filtered: 670 Finish binding event prediction: 5.9m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 18983 Insignificant: 377 Filtered: 4714 Finish binding event prediction: 11.1m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 24203 Insignificant: 523 Filtered: 6381 Finish binding event prediction: 7.7m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 25364 Insignificant: 420 Filtered: 6638 Finish binding event prediction: 8.0m Refine read distribution from 2000 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 35688 Insignificant: 8058 Filtered: 10 Finish binding event prediction: 5.8m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 6045 Insignificant: 4705 Filtered: 74 Finish binding event prediction: 4.1m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 1897 Insignificant: 537 Filtered: 125 Finish binding event prediction: 9.0m Refine read distribution from 783 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 2159 Insignificant: 441 Filtered: 153 Finish binding event prediction: 8.7m Refine read distribution from 881 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 41623 Insignificant: 5253 Filtered: 6 Finish binding event prediction: 4.9m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 43390 Insignificant: 4692 Filtered: 4 Finish binding event prediction: 5.2m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 37613 Insignificant: 8586 Filtered: 4 Finish binding event prediction: 6.8m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 2175 Insignificant: 499 Filtered: 139 Finish binding event prediction: 10.5m Refine read distribution from 888 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 2135 Insignificant: 504 Filtered: 320 Finish binding event prediction: 12.5m Refine read distribution from 1008 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 3475 Insignificant: 526 Filtered: 498 Finish binding event prediction: 12.5m Refine read distribution from 1944 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 1273 Insignificant: 2280 Filtered: 70 Finish binding event prediction: 8.0m Refine read distribution from 664 binding events. --------------------------- Events discovered Significant: 1449 Insignificant: 2090 Filtered: 75 Finish binding event prediction: 8.1m Refine read distribution from 748 binding events. --------------------------- Events discovered Significant: 2404 Insignificant: 501 Filtered: 243 Finish binding event prediction: 14.2m Refine read distribution from 1106 binding events. Running with 4 threads ... --------------------------- Events discovered Significant: 1426 Insignificant: 1806 Filtered: 64 Finish binding event prediction: 9.4m Refine read distribution from 726 binding events. --------------------------- Events discovered Significant: 2658 Insignificant: 2444 Filtered: 270 Finish binding event prediction: 9.3m Refine read distribution from 1686 binding events. --------------------------- Events discovered Significant: 9799 Insignificant: 4098 Filtered: 12 Finish binding event prediction: 10.3m Refine read distribution from 2000 binding events. --------------------------- Events discovered Significant: 2635 Insignificant: 2343 Filtered: 337 Finish binding event prediction: 10.4m Refine read distribution from 1666 binding events.