/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H2A.all.fa -out H2A.all.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H2B.all.fa -out H2B.all.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H3.all.fa -out H3.all.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H4.all.fa -out H4.all.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H2A.all.max300aa.fa -out H2A.all.max300aa.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H2B.all.max300aa.fa -out H2B.all.max300aa.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H3.all.max200aa.fa -out H3.all.max200aa.muscle.fa &
/oak/stanford/groups/akundaje/marinovg/programs/muscle3.8.31/muscle3.8.31_i86linux64 -in H4.all.max200aa.fa -out H4.all.max200aa.muscle.fa &