Index of /kundaje/marinovg/oak/Symbiodinium/2023-12-21-Amphidinium_carteri_Hi-C/juicer-Amphidinium_carterae-Acart.genome.v1-Hi-C-3D_DNA-r10

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]Acart.genome.v1.0.asm2024-01-21 23:21 1.2K 
[ ]Acart.genome.v1.0.assembly2024-01-21 23:29 8.3K 
[ ]Acart.genome.v1.0.cprops2024-02-12 04:32 6.8K 
[ ]Acart.genome.v1.0.hic2024-01-22 00:45 934M 
[TXT]Acart.genome.v1.0_asm.scaffold_track.txt2024-01-21 23:29 39K 
[TXT]Acart.genome.v1.0_asm.superscaf_track.txt2024-01-21 23:29 5.8K 
[ ]Acart.genome.v1.1.asm2024-01-22 15:55 194K 
[ ]Acart.genome.v1.1.assembly2024-01-22 16:01 1.6M 
[ ]Acart.genome.v1.1.cprops2024-01-22 00:49 1.4M 
[ ]Acart.genome.v1.1.hic2024-01-22 17:20 939M 
[TXT]Acart.genome.v1.1_asm.scaffold_track.txt2024-01-22 16:01 4.9M 
[TXT]Acart.genome.v1.1_asm.superscaf_track.txt2024-01-22 16:01 2.6M 
[ ]Acart.genome.v1.2.asm2024-01-23 02:10 308K 
[ ]Acart.genome.v1.2.assembly2024-01-23 02:16 2.6M 
[ ]Acart.genome.v1.2.cprops2024-01-22 17:25 2.2M 
[ ]Acart.genome.v1.2.hic2024-01-23 03:32 940M 
[TXT]Acart.genome.v1.2_asm.scaffold_track.txt2024-01-23 02:16 7.7M 
[TXT]Acart.genome.v1.2_asm.superscaf_track.txt2024-01-23 02:16 4.6M 
[ ]Acart.genome.v1.3.asm2024-01-23 10:08 385K 
[ ]Acart.genome.v1.3.assembly2024-01-23 10:14 3.2M 
[ ]Acart.genome.v1.3.cprops2024-01-23 03:37 2.8M 
[ ]Acart.genome.v1.3.hic2024-01-23 11:35 940M 
[TXT]Acart.genome.v1.3_asm.scaffold_track.txt2024-01-23 10:14 9.6M 
[TXT]Acart.genome.v1.3_asm.superscaf_track.txt2024-01-23 10:14 6.0M 
[ ]Acart.genome.v1.4.asm2024-01-23 18:50 437K 
[ ]Acart.genome.v1.4.assembly2024-01-23 18:56 3.7M 
[ ]Acart.genome.v1.4.cprops2024-01-23 11:40 3.2M 
[ ]Acart.genome.v1.4.hic2024-01-23 20:10 939M 
[TXT]Acart.genome.v1.4_asm.scaffold_track.txt2024-01-23 18:56 11M 
[TXT]Acart.genome.v1.4_asm.superscaf_track.txt2024-01-23 18:56 7.0M 
[ ]Acart.genome.v1.5.asm2024-01-24 03:32 476K 
[ ]Acart.genome.v1.5.assembly2024-01-24 03:38 4.0M 
[ ]Acart.genome.v1.5.cprops2024-01-23 20:16 3.5M 
[ ]Acart.genome.v1.5.hic2024-01-24 04:59 940M 
[TXT]Acart.genome.v1.5_asm.scaffold_track.txt2024-01-24 03:38 12M 
[TXT]Acart.genome.v1.5_asm.superscaf_track.txt2024-01-24 03:38 7.8M 
[ ]Acart.genome.v1.6.asm2024-01-24 12:18 509K 
[ ]Acart.genome.v1.6.assembly2024-01-24 12:24 4.3M 
[ ]Acart.genome.v1.6.cprops2024-01-24 05:04 3.7M 
[ ]Acart.genome.v1.6.hic2024-01-24 13:34 939M 
[TXT]Acart.genome.v1.6_asm.scaffold_track.txt2024-01-24 12:24 13M 
[TXT]Acart.genome.v1.6_asm.superscaf_track.txt2024-01-24 12:24 8.4M 
[ ]Acart.genome.v1.7.asm2024-01-24 21:07 538K 
[ ]Acart.genome.v1.7.assembly2024-01-24 21:13 4.5M 
[ ]Acart.genome.v1.7.cprops2024-01-24 13:39 3.9M 
[ ]Acart.genome.v1.7.hic2024-01-24 22:24 938M 
[TXT]Acart.genome.v1.7_asm.scaffold_track.txt2024-01-24 21:13 13M 
[TXT]Acart.genome.v1.7_asm.superscaf_track.txt2024-01-24 21:13 9.0M 
[ ]Acart.genome.v1.8.asm2024-01-25 06:19 563K 
[ ]Acart.genome.v1.8.assembly2024-01-25 06:25 4.7M 
[ ]Acart.genome.v1.8.cprops2024-01-24 22:28 4.1M 
[ ]Acart.genome.v1.8.hic2024-01-25 07:35 939M 
[TXT]Acart.genome.v1.8_asm.scaffold_track.txt2024-01-25 06:24 14M 
[TXT]Acart.genome.v1.8_asm.superscaf_track.txt2024-01-25 06:25 9.5M 
[ ]Acart.genome.v1.9.asm2024-01-25 15:11 590K 
[ ]Acart.genome.v1.9.assembly2024-01-25 15:16 5.0M 
[ ]Acart.genome.v1.9.cprops2024-01-25 07:39 4.3M 
[ ]Acart.genome.v1.9.hic2024-01-25 16:19 872M 
[TXT]Acart.genome.v1.9_asm.scaffold_track.txt2024-01-25 15:16 15M 
[TXT]Acart.genome.v1.9_asm.superscaf_track.txt2024-01-25 15:16 10M 
[ ]Acart.genome.v1.10.asm2024-01-26 00:05 661K 
[ ]Acart.genome.v1.10.assembly2024-01-26 00:10 5.5M 
[ ]Acart.genome.v1.10.cprops2024-01-25 16:24 4.8M 
[ ]Acart.genome.v1.10.hic2024-01-26 01:17 939M 
[TXT]Acart.genome.v1.10_asm.scaffold_track.txt2024-01-26 00:10 16M 
[TXT]Acart.genome.v1.10_asm.superscaf_track.txt2024-01-26 00:10 11M 
[ ]Acart.genome.v1.FINAL.assembly2024-02-12 07:31 838K 
[ ]Acart.genome.v1.FINAL.chrom.sizes2024-02-12 09:18 203K 
[ ]Acart.genome.v1.FINAL.fasta2024-02-12 07:31 1.2G 
[ ]Acart.genome.v1.FINAL.hic2024-01-26 21:44 961M 
[TXT]Acart.genome.v1.FINAL_asm.scaffold_track.txt2024-01-26 19:45 2.3M 
[TXT]Acart.genome.v1.FINAL_asm.superscaf_track.txt2024-01-26 19:45 1.0M 
[ ]Acart.genome.v1.cprops2024-02-12 04:32 6.8K 
[TXT]Acart.genome.v1.edits.txt2024-01-25 16:24 7.3M 
[ ]Acart.genome.v1.final.asm2024-02-12 04:32 90K 
[ ]Acart.genome.v1.final.assembly2024-02-12 05:32 792K 
[ ]Acart.genome.v1.final.cprops2024-02-12 04:32 686K 
[ ]Acart.genome.v1.final.fasta2024-02-12 07:25 1.2G 
[ ]Acart.genome.v1.final.hic2024-02-12 07:24 960M 
[TXT]Acart.genome.v1.final_asm.scaffold_track.txt2024-02-12 05:32 2.3M 
[TXT]Acart.genome.v1.final_asm.superscaf_track.txt2024-02-12 05:32 1.0M 
[ ]Acart.genome.v1.polished.asm2024-01-26 07:20 662K 
[ ]Acart.genome.v1.polished.cprops2024-01-26 01:21 4.8M 
[ ]Acart.genome.v1.polished.depletion_score_narrow.wig2024-01-26 01:21 15M 
[ ]Acart.genome.v1.polished.depletion_score_wide.wig2024-01-26 01:18 221K 
[TXT]Acart.genome.v1.polished.edits_2D.txt2024-01-26 01:21 9.5K 
[ ]Acart.genome.v1.polished.hic2024-01-26 08:32 939M 
[ ]Acart.genome.v1.polished.mismatch_narrow.bed2024-01-26 01:21 39K 
[ ]Acart.genome.v1.polished.mismatch_wide.bed2024-01-26 01:18 3.0K 
[TXT]Acart.genome.v1.polished.mismatches_2D.txt2024-01-26 01:21 11K 
[ ]Acart.genome.v1.polished.split.assembly2024-01-26 14:40 5.5M 
[ ]Acart.genome.v1.polished.split.depletion_score_narrow.wig2024-01-26 08:36 15M 
[ ]Acart.genome.v1.polished.split.depletion_score_wide.wig2024-01-26 08:34 221K 
[TXT]Acart.genome.v1.polished.split.edits_2D.txt2024-01-26 08:36 1.8K 
[ ]Acart.genome.v1.polished.split.mismatch_narrow.bed2024-01-26 08:36 40K 
[ ]Acart.genome.v1.polished.split.mismatch_wide.bed2024-01-26 08:34 3.0K 
[TXT]Acart.genome.v1.polished.split.mismatches_2D.txt2024-01-26 08:36 14K 
[TXT]Acart.genome.v1.polished.split.suspicious_2D.txt2024-01-26 08:36 16K 
[TXT]Acart.genome.v1.polished.suspect_2D.txt2024-01-26 01:21 20K 
[TXT]Acart.genome.v1.polished_asm.scaffold_track.txt2024-01-26 07:25 16M 
[TXT]Acart.genome.v1.polished_asm.superscaf_track.txt2024-01-26 07:25 11M 
[ ]Acart.genome.v1.rawchrom.asm2024-01-26 15:50 90K 
[ ]Acart.genome.v1.rawchrom.assembly2024-01-26 16:49 792K 
[ ]Acart.genome.v1.rawchrom.cprops2024-01-26 15:50 686K 
[ ]Acart.genome.v1.rawchrom.fasta2024-01-26 18:41 1.2G 
[ ]Acart.genome.v1.rawchrom.hic2024-01-26 18:40 960M 
[TXT]Acart.genome.v1.rawchrom_asm.scaffold_track.txt2024-01-26 16:49 2.3M 
[TXT]Acart.genome.v1.rawchrom_asm.superscaf_track.txt2024-01-26 16:49 1.0M 
[ ]Acart.genome.v1.resolved.asm2024-01-26 00:05 661K 
[ ]Acart.genome.v1.resolved.cprops2024-01-25 16:24 4.8M 
[ ]Acart.genome.v1.resolved.hic2024-01-26 01:17 939M 
[ ]Acart.genome.v1.resolved.polish.assembly2024-01-26 07:25 5.5M 
[TXT]Acart.genome.v1.resolved_asm.scaffold_track.txt2024-01-26 00:10 16M 
[TXT]Acart.genome.v1.resolved_asm.superscaf_track.txt2024-01-26 00:10 11M 
[ ]Acart.genome.v1.split.asm2024-01-26 14:34 662K 
[ ]Acart.genome.v1.split.assembly2024-01-26 15:48 5.5M 
[ ]Acart.genome.v1.split.cprops2024-01-26 08:36 4.8M 
[ ]Acart.genome.v1.split.hic2024-01-26 15:48 939M 
[TXT]Acart.genome.v1.split_asm.scaffold_track.txt2024-01-26 14:40 16M 
[TXT]Acart.genome.v1.split_asm.superscaf_track.txt2024-01-26 14:40 11M 
[ ]LICENSE2024-01-21 21:29 1.0K 
[TXT]README.md2024-01-21 21:29 8.7K 
[TXT]archive.Acart.genome.v1.edits.at.step.1.txt2024-01-22 17:24 1.8M 
[TXT]archive.Acart.genome.v1.edits.at.step.2.txt2024-01-23 03:36 3.1M 
[TXT]archive.Acart.genome.v1.edits.at.step.3.txt2024-01-23 11:40 4.0M 
[TXT]archive.Acart.genome.v1.edits.at.step.4.txt2024-01-23 20:16 4.6M 
[TXT]archive.Acart.genome.v1.edits.at.step.5.txt2024-01-24 05:03 5.1M 
[TXT]archive.Acart.genome.v1.edits.at.step.6.txt2024-01-24 13:38 5.5M 
[TXT]archive.Acart.genome.v1.edits.at.step.7.txt2024-01-24 22:28 5.8M 
[TXT]archive.Acart.genome.v1.edits.at.step.8.txt2024-01-25 07:39 6.1M 
[TXT]archive.Acart.genome.v1.edits.at.step.9.txt2024-01-25 16:23 6.5M 
[DIR]bwa-indexes/2024-02-12 09:57 -  
[ ]coverage_wide.at.step.0.wig2024-01-22 00:49 928K 
[ ]coverage_wide.at.step.1.wig2024-01-22 17:24 927K 
[ ]coverage_wide.at.step.2.wig2024-01-23 03:36 928K 
[ ]coverage_wide.at.step.3.wig2024-01-23 11:40 928K 
[ ]coverage_wide.at.step.4.wig2024-01-23 20:16 928K 
[ ]coverage_wide.at.step.5.wig2024-01-24 05:03 928K 
[ ]coverage_wide.at.step.6.wig2024-01-24 13:38 928K 
[ ]coverage_wide.at.step.7.wig2024-01-24 22:28 929K 
[ ]coverage_wide.at.step.8.wig2024-01-25 07:39 928K 
[ ]coverage_wide.at.step.9.wig2024-01-25 16:23 931K 
[DIR]data/2024-01-21 21:29 -  
[ ]depletion_score_narrow.at.step.0.wig2024-01-22 00:49 15M 
[ ]depletion_score_narrow.at.step.1.wig2024-01-22 17:24 15M 
[ ]depletion_score_narrow.at.step.2.wig2024-01-23 03:36 15M 
[ ]depletion_score_narrow.at.step.3.wig2024-01-23 11:40 15M 
[ ]depletion_score_narrow.at.step.4.wig2024-01-23 20:15 15M 
[ ]depletion_score_narrow.at.step.5.wig2024-01-24 05:03 15M 
[ ]depletion_score_narrow.at.step.6.wig2024-01-24 13:38 15M 
[ ]depletion_score_narrow.at.step.7.wig2024-01-24 22:28 15M 
[ ]depletion_score_narrow.at.step.8.wig2024-01-25 07:39 15M 
[ ]depletion_score_narrow.at.step.9.wig2024-01-25 16:23 15M 
[ ]depletion_score_wide.at.step.0.wig2024-01-22 00:47 867K 
[ ]depletion_score_wide.at.step.1.wig2024-01-22 17:22 857K 
[ ]depletion_score_wide.at.step.2.wig2024-01-23 03:34 858K 
[ ]depletion_score_wide.at.step.3.wig2024-01-23 11:38 859K 
[ ]depletion_score_wide.at.step.4.wig2024-01-23 20:12 860K 
[ ]depletion_score_wide.at.step.5.wig2024-01-24 05:01 860K 
[ ]depletion_score_wide.at.step.6.wig2024-01-24 13:36 859K 
[ ]depletion_score_wide.at.step.7.wig2024-01-24 22:26 862K 
[ ]depletion_score_wide.at.step.8.wig2024-01-25 07:37 862K 
[ ]depletion_score_wide.at.step.9.wig2024-01-25 16:21 843K 
[DIR]edit/2024-01-21 21:29 -  
[TXT]edits.for.step.1.txt2024-01-22 00:49 1.9M 
[TXT]edits.for.step.2.txt2024-01-22 17:24 1.4M 
[TXT]edits.for.step.3.txt2024-01-23 03:36 1.0M 
[TXT]edits.for.step.4.txt2024-01-23 11:40 681K 
[TXT]edits.for.step.5.txt2024-01-23 20:16 541K 
[TXT]edits.for.step.6.txt2024-01-24 05:03 451K 
[TXT]edits.for.step.7.txt2024-01-24 13:38 396K 
[TXT]edits.for.step.8.txt2024-01-24 22:28 340K 
[TXT]edits.for.step.9.txt2024-01-25 07:39 369K 
[TXT]edits.for.step.10.txt2024-01-25 16:23 824K 
[DIR]finalize/2024-01-21 21:29 -  
[TXT]h.edits.txt2024-01-26 08:36 1.8K 
[DIR]lift/2024-01-21 21:29 -  
[DIR]merge/2024-01-21 21:29 -  
[ ]mismatch_narrow.at.step.0.bed2024-01-22 00:49 327K 
[ ]mismatch_narrow.at.step.1.bed2024-01-22 17:24 440K 
[ ]mismatch_narrow.at.step.2.bed2024-01-23 03:36 474K 
[ ]mismatch_narrow.at.step.3.bed2024-01-23 11:40 468K 
[ ]mismatch_narrow.at.step.4.bed2024-01-23 20:16 473K 
[ ]mismatch_narrow.at.step.5.bed2024-01-24 05:03 476K 
[ ]mismatch_narrow.at.step.6.bed2024-01-24 13:38 476K 
[ ]mismatch_narrow.at.step.7.bed2024-01-24 22:28 478K 
[ ]mismatch_narrow.at.step.8.bed2024-01-25 07:39 479K 
[ ]mismatch_narrow.at.step.9.bed2024-01-25 16:23 627K 
[ ]mismatch_wide.at.step.0.bed2024-01-22 00:47 105K 
[ ]mismatch_wide.at.step.1.bed2024-01-22 17:22 100K 
[ ]mismatch_wide.at.step.2.bed2024-01-23 03:34 104K 
[ ]mismatch_wide.at.step.3.bed2024-01-23 11:38 105K 
[ ]mismatch_wide.at.step.4.bed2024-01-23 20:12 108K 
[ ]mismatch_wide.at.step.5.bed2024-01-24 05:01 109K 
[ ]mismatch_wide.at.step.6.bed2024-01-24 13:36 108K 
[ ]mismatch_wide.at.step.7.bed2024-01-24 22:26 106K 
[ ]mismatch_wide.at.step.8.bed2024-01-25 07:37 110K 
[ ]mismatch_wide.at.step.9.bed2024-01-25 16:21 45K 
[TXT]mismatches.at.step.0.txt2024-01-22 00:49 4.6K 
[TXT]mismatches.at.step.1.txt2024-01-22 17:24 265K 
[TXT]mismatches.at.step.2.txt2024-01-23 03:36 294K 
[TXT]mismatches.at.step.3.txt2024-01-23 11:40 293K 
[TXT]mismatches.at.step.4.txt2024-01-23 20:16 309K 
[TXT]mismatches.at.step.5.txt2024-01-24 05:03 303K 
[TXT]mismatches.at.step.6.txt2024-01-24 13:38 300K 
[TXT]mismatches.at.step.7.txt2024-01-24 22:28 294K 
[TXT]mismatches.at.step.8.txt2024-01-25 07:39 289K 
[TXT]mismatches.at.step.9.txt2024-01-25 16:23 266K 
[DIR]polish/2024-01-21 21:29 -  
[ ]repeats_wide.at.step.0.bed2024-01-22 00:49 172K 
[ ]repeats_wide.at.step.1.bed2024-01-22 17:24 139K 
[ ]repeats_wide.at.step.2.bed2024-01-23 03:36 134K 
[ ]repeats_wide.at.step.3.bed2024-01-23 11:40 120K 
[ ]repeats_wide.at.step.4.bed2024-01-23 20:16 119K 
[ ]repeats_wide.at.step.5.bed2024-01-24 05:03 126K 
[ ]repeats_wide.at.step.6.bed2024-01-24 13:38 123K 
[ ]repeats_wide.at.step.7.bed2024-01-24 22:28 123K 
[ ]repeats_wide.at.step.8.bed2024-01-25 07:39 154K 
[ ]repeats_wide.at.step.9.bed2024-01-25 16:23 159K 
[TXT]run-asm-pipeline-post-review.sh2024-01-21 21:29 11K 
[TXT]run-asm-pipeline.sh2024-01-21 21:29 44K 
[DIR]scaffold/2024-01-21 21:29 -  
[DIR]seal/2024-01-21 21:29 -  
[DIR]split/2024-01-21 21:29 -  
[DIR]split_chrom_aware/2024-01-21 21:29 -  
[DIR]supp/2024-01-21 21:29 -  
[ ]suspect.at.step.0.bed2024-01-22 00:49 484K 
[ ]suspect.at.step.1.bed2024-01-22 17:24 537K 
[ ]suspect.at.step.2.bed2024-01-23 03:36 577K 
[ ]suspect.at.step.3.bed2024-01-23 11:40 567K 
[ ]suspect.at.step.4.bed2024-01-23 20:16 573K 
[ ]suspect.at.step.5.bed2024-01-24 05:03 580K 
[ ]suspect.at.step.6.bed2024-01-24 13:38 581K 
[ ]suspect.at.step.7.bed2024-01-24 22:28 584K 
[ ]suspect.at.step.8.bed2024-01-25 07:39 607K 
[ ]suspect.at.step.9.bed2024-01-25 16:23 744K 
[TXT]suspect_2D.at.step.0.txt2024-01-22 00:49 1.9M 
[TXT]suspect_2D.at.step.1.txt2024-01-22 17:24 1.7M 
[TXT]suspect_2D.at.step.2.txt2024-01-23 03:36 1.3M 
[TXT]suspect_2D.at.step.3.txt2024-01-23 11:40 1.0M 
[TXT]suspect_2D.at.step.4.txt2024-01-23 20:16 850K 
[TXT]suspect_2D.at.step.5.txt2024-01-24 05:03 754K 
[TXT]suspect_2D.at.step.6.txt2024-01-24 13:38 696K 
[TXT]suspect_2D.at.step.7.txt2024-01-24 22:28 633K 
[TXT]suspect_2D.at.step.8.txt2024-01-25 07:39 658K 
[TXT]suspect_2D.at.step.9.txt2024-01-25 16:23 1.1M 
[DIR]utils/2024-01-21 21:29 -  
[DIR]visualize/2024-01-21 21:29 -  
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