export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1986-Symbiodinium_SSA01_1_5pFA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1986-Symbiodinium_SSA01_1_5pFA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/GCA_905221635.1_Slin_CCMP2456_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/bwa-indexes/GCA_905221635.1_Slin_CCMP2456_genomic.fa