#!/bin/bash
#SBATCH --job-name=zL1114-1
#SBATCH --output=zL1114.1.out
#SBATCH --error=zL1114.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1114-Symbiodinium_SSA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1114-Symbiodinium_SSA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/GCA_905221635.1_Slin_CCMP2456_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/bwa-indexes/GCA_905221635.1_Slin_CCMP2456_genomic.fa