Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1114-Symbiodinium_SSA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2021-04-17-NextSeq-run/juicer-L1114-Symbiodinium_SSA_Hi-C-Symbiodinium_sp._CCMP2456-Slin_CCMP2456 -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/GCA_905221635.1_Slin_CCMP2456_genomic.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_sp._CCMP2456-Slin_CCMP2456/bwa-indexes/GCA_905221635.1_Slin_CCMP2456_genomic.fa                                                                                                                                                                                                                                                 
Sequenced Read Pairs:  229,420,133
 Normal Paired: 82,122,252 (35.80%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 147,297,881 (64.20%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 82,122,252 (35.80%)
Unique Reads: 53,482,948 (23.31%)
PCR Duplicates: 28,548,771 (12.44%)
Optical Duplicates: 90,533 (0.04%)
Library Complexity Estimate: 88,537,681
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 11,103,076 (4.84% / 20.76%)
Hi-C Contacts: 42,379,872 (18.47% / 79.24%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 24,293,606  (10.59% / 45.42%)
Intra-chromosomal: 18,086,266  (7.88% / 33.82%)
Short Range (<20Kb): 17,669,360  (7.70% / 33.04%)
Long Range (>20Kb): 411,833  (0.18% / 0.77%)