Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1410-Dictyostelium_discoideum_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/Dictyostelium_discoideum.dictybase.01.20.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/bwa-indexes/Dictyostelium_discoideum.dictybase.01.20.fa                                                                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  321,405,752
 Normal Paired: 9,309,013 (2.90%)
 Chimeric Paired: 7,755,842 (2.41%)
 Chimeric Ambiguous: 6,561,762 (2.04%)
 Unmapped: 297,779,135 (92.65%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 17,064,855 (5.31%)
Unique Reads: 12,250,310 (3.81%)
PCR Duplicates: 4,770,583 (1.48%)
Optical Duplicates: 43,962 (0.01%)
Library Complexity Estimate: 24,376,648
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,960,253 (0.92% / 24.16%)
Hi-C Contacts: 9,290,057 (2.89% / 75.84%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 2,288,127  (0.71% / 18.68%)
Intra-chromosomal: 7,001,930  (2.18% / 57.16%)
Short Range (<20Kb): 4,867,480  (1.51% / 39.73%)
Long Range (>20Kb): 2,133,181  (0.66% / 17.41%)