#!/bin/bash
#SBATCH --job-name=zL1410-3D10-1
#SBATCH --output=zL1410-3D10.1.out
#SBATCH --error=zL1410-3D10.1.err
#SBATCH --time=48:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=1
#SBATCH --mem=100000
./run-asm-pipeline.sh -r 10 --sort-output --build-gapped-map -i 1000 /oak/stanford/groups/akundaje/marinovg/genomes/Mycetozoa/Dictyostelium_discoideum/bwa-indexes/Dictyostelium_discoideum.dictybase.01.20.fa /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1410-Dictyostelium_discoideum_Hi-C-MboI_MseI/aligned/merged_nodups.txt