Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1409-Chaetoceros_gracilis_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1400-Chaetoceros_gracilis_gDNA/SPAdes-3.14-L1400-Chaetoceros_gracilis_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1400-Chaetoceros_gracilis_gDNA/SPAdes-3.14-L1400-Chaetoceros_gracilis_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                
Sequenced Read Pairs:  130,312,181
 Normal Paired: 116,537,542 (89.43%)
 Chimeric Paired: 8,371,542 (6.42%)
 Chimeric Ambiguous: 2,462,802 (1.89%)
 Unmapped: 2,940,295 (2.26%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 124,909,084 (95.85%)
Unique Reads: 43,300,504 (33.23%)
PCR Duplicates: 81,408,654 (62.47%)
Optical Duplicates: 199,926 (0.15%)
Library Complexity Estimate: 46,476,721
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,408,718 (1.08% / 3.25%)
Hi-C Contacts: 41,891,786 (32.15% / 96.75%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,602,191  (10.44% / 31.41%)
Intra-chromosomal: 28,289,595  (21.71% / 65.33%)
Short Range (<20Kb): 28,082,923  (21.55% / 64.86%)
Long Range (>20Kb): 196,549  (0.15% / 0.45%)