Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1408-Cyclotella_meninghiana_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1399-Cyclotella_meninghiana_gDNA/SPAdes-3.14-L1399-Cyclotella_meninghiana_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1399-Cyclotella_meninghiana_gDNA/SPAdes-3.14-L1399-Cyclotella_meninghiana_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  155,815,183
 Normal Paired: 122,194,099 (78.42%)
 Chimeric Paired: 21,681,809 (13.92%)
 Chimeric Ambiguous: 9,835,668 (6.31%)
 Unmapped: 2,103,607 (1.35%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 143,875,908 (92.34%)
Unique Reads: 65,021,586 (41.73%)
PCR Duplicates: 78,531,520 (50.40%)
Optical Duplicates: 322,802 (0.21%)
Library Complexity Estimate: 76,922,047
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 7,690,538 (4.94% / 11.83%)
Hi-C Contacts: 57,331,048 (36.79% / 88.17%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 24,188,877  (15.52% / 37.20%)
Intra-chromosomal: 33,142,171  (21.27% / 50.97%)
Short Range (<20Kb): 30,617,591  (19.65% / 47.09%)
Long Range (>20Kb): 2,512,635  (1.61% / 3.86%)