Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1407-Dictyota_dichotoma_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1398-Dictyota_dichotoma_gDNA/SPAdes-3.14-L1398-Dictyota_dichotoma_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1398-Dictyota_dichotoma_gDNA/SPAdes-3.14-L1398-Dictyota_dichotoma_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                          
Sequenced Read Pairs:  110,878,454
 Normal Paired: 68,463,784 (61.75%)
 Chimeric Paired: 26,295,550 (23.72%)
 Chimeric Ambiguous: 10,045,925 (9.06%)
 Unmapped: 6,073,195 (5.48%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 94,759,334 (85.46%)
Unique Reads: 67,122,974 (60.54%)
PCR Duplicates: 27,316,570 (24.64%)
Optical Duplicates: 319,790 (0.29%)
Library Complexity Estimate: 129,960,228
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 4,401,143 (3.97% / 6.56%)
Hi-C Contacts: 62,721,831 (56.57% / 93.44%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 22,103,974  (19.94% / 32.93%)
Intra-chromosomal: 40,617,857  (36.63% / 60.51%)
Short Range (<20Kb): 33,234,145  (29.97% / 49.51%)
Long Range (>20Kb): 7,382,386  (6.66% / 11.00%)