#!/bin/bash
#SBATCH --job-name=zL1406-1
#SBATCH --output=zL1406.1.out
#SBATCH --error=zL1406.1.err
#SBATCH --time=160:00:00
#SBATCH -p akundaje,sfgf
#SBATCH --cpus-per-task=16
#SBATCH --mem=100000
export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/bwa-0.7.5a; module load system; module load parallel/20180122; module load java; export PATH=$PATH:/oak/stanford/groups/akundaje/marinovg/programs/juicer_tools.1.8.9/; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1406-Sphacelaria_sp_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1397-Sphacelaria_sp_gDNA/SPAdes-3.14-L1397-Sphacelaria_sp_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1397-Sphacelaria_sp_gDNA/SPAdes-3.14-L1397-Sphacelaria_sp_gDNA/bwa-indexes/scaffolds.fa