Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1406-Sphacelaria_sp_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1397-Sphacelaria_sp_gDNA/SPAdes-3.14-L1397-Sphacelaria_sp_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1397-Sphacelaria_sp_gDNA/SPAdes-3.14-L1397-Sphacelaria_sp_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                              
Sequenced Read Pairs:  139,456,956
 Normal Paired: 114,982,228 (82.45%)
 Chimeric Paired: 14,959,867 (10.73%)
 Chimeric Ambiguous: 5,600,588 (4.02%)
 Unmapped: 3,914,273 (2.81%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 129,942,095 (93.18%)
Unique Reads: 79,664,913 (57.13%)
PCR Duplicates: 49,829,908 (35.73%)
Optical Duplicates: 447,274 (0.32%)
Library Complexity Estimate: 121,554,835
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 397,895 (0.29% / 0.50%)
Hi-C Contacts: 79,267,018 (56.84% / 99.50%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,635,373  (9.78% / 17.12%)
Intra-chromosomal: 65,631,645  (47.06% / 82.38%)
Short Range (<20Kb): 63,400,696  (45.46% / 79.58%)
Long Range (>20Kb): 2,229,247  (1.60% / 2.80%)