Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-02-13-Novogene-NovaSeq/juicer-L1405-Navicula_sp_Hi-C-MboI_MseI -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1396-Navicula_sp_gDNA/SPAdes-3.14-L1396-Navicula_sp_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1396-Navicula_sp_gDNA/SPAdes-3.14-L1396-Navicula_sp_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                                             
Sequenced Read Pairs:  154,255,717
 Normal Paired: 134,912,812 (87.46%)
 Chimeric Paired: 11,970,323 (7.76%)
 Chimeric Ambiguous: 5,554,753 (3.60%)
 Unmapped: 1,817,829 (1.18%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 146,883,135 (95.22%)
Unique Reads: 78,196,680 (50.69%)
PCR Duplicates: 68,326,580 (44.29%)
Optical Duplicates: 359,875 (0.23%)
Library Complexity Estimate: 103,071,366
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,090,215 (1.36% / 2.67%)
Hi-C Contacts: 76,106,465 (49.34% / 97.33%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 13,066,400  (8.47% / 16.71%)
Intra-chromosomal: 63,040,065  (40.87% / 80.62%)
Short Range (<20Kb): 61,883,780  (40.12% / 79.14%)
Long Range (>20Kb): 1,152,078  (0.75% / 1.47%)