Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1197-Dunaliella_salina_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1361-Dunaliella_sp._gDNA/SPAdes-3.14-L1361-Dunaliella_sp._gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1361-Dunaliella_sp._gDNA/SPAdes-3.14-L1361-Dunaliella_sp._gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  42,416,668
 Normal Paired: 11,582,499 (27.31%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 30,834,169 (72.69%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 11,582,499 (27.31%)
Unique Reads: 3,411,623 (8.04%)
PCR Duplicates: 8,170,058 (19.26%)
Optical Duplicates: 818 (0.00%)
Library Complexity Estimate: 3,547,095
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 670,651 (1.58% / 19.66%)
Hi-C Contacts: 2,740,972 (6.46% / 80.34%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 26% - 24% - 25%
Inter-chromosomal: 275,120  (0.65% / 8.06%)
Intra-chromosomal: 2,465,852  (5.81% / 72.28%)
Short Range (<20Kb): 2,461,256  (5.80% / 72.14%)
Long Range (>20Kb): 4,371  (0.01% / 0.13%)