Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1194-Gonium_pectorale_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1364-Gonium_sp._gDNA/SPAdes-3.14-L1364-Gonium_sp._gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1364-Gonium_sp._gDNA/SPAdes-3.14-L1364-Gonium_sp._gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                                                                                      
Sequenced Read Pairs:  49,509,479
 Normal Paired: 31,041,766 (62.70%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 18,467,713 (37.30%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 31,041,766 (62.70%)
Unique Reads: 29,496,358 (59.58%)
PCR Duplicates: 1,537,817 (3.11%)
Optical Duplicates: 7,591 (0.02%)
Library Complexity Estimate: 302,712,703
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 2,572,443 (5.20% / 8.72%)
Hi-C Contacts: 26,923,915 (54.38% / 91.28%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 14,411,091  (29.11% / 48.86%)
Intra-chromosomal: 12,512,824  (25.27% / 42.42%)
Short Range (<20Kb): 10,919,940  (22.06% / 37.02%)
Long Range (>20Kb): 1,589,677  (3.21% / 5.39%)