Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2020-01-23-Novogene-NovaSeq/juicer-L1030-Nanochloropsis_oculata_Hi-C -y none -s none -p /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1358-Nannochloropsis_oculata_gDNA/SPAdes-3.14-L1358-Nannochloropsis_oculata_gDNA/scaffolds.chrom.sizes -y none -s none -z /oak/stanford/groups/akundaje/marinovg/ENCODE4/datasets-gDNA/L1358-Nannochloropsis_oculata_gDNA/SPAdes-3.14-L1358-Nannochloropsis_oculata_gDNA/bwa-indexes/scaffolds.fa                                                                                                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  75,382,035
 Normal Paired: 55,160,035 (73.17%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 20,222,000 (26.83%)
 Ligation Motif Present: 0 (0.00%)
Alignable (Normal+Chimeric Paired): 55,160,035 (73.17%)
Unique Reads: 51,148,270 (67.85%)
PCR Duplicates: 3,978,764 (5.28%)
Optical Duplicates: 33,001 (0.04%)
Library Complexity Estimate: 363,295,586
Intra-fragment Reads: 0 (0.00% / 0.00%)
Below MAPQ Threshold: 1,634,155 (2.17% / 3.19%)
Hi-C Contacts: 49,514,115 (65.68% / 96.81%)
 Ligation Motif Present: 0  (0.00% / 0.00%)
 3' Bias (Long Range): 0% - 0%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 32,216,911  (42.74% / 62.99%)
Intra-chromosomal: 17,297,204  (22.95% / 33.82%)
Short Range (<20Kb): 12,017,605  (15.94% / 23.50%)
Long Range (>20Kb): 5,276,545  (7.00% / 10.32%)