Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -S final -t 60 -D /srv/scratch/marinovg/juicer-L142+L533+L534-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L142+L533+L534-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                                                   
Unique Reads: 766,676,481 
PCR Duplicates: 112,073,967 
Optical Duplicates: 1,269,344 
Library Complexity Estimate: 3,145,450,296
Intra-fragment Reads: 42,739,504(5.57%)
Below MAPQ Threshold: 195,049,893(25.44%)
Hi-C Contacts: 528,887,084(68.98%)
 Ligation Motif Present: 110,949,264 (14.47%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 321,015,671 (41.87%)
Intra-chromosomal: 207,871,413 (27.11%)
Short Range (<20Kb): 89,216,715 (11.64%)
Long Range (>20Kb): 118,653,803 (15.48%)