Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  128,072,777
 Normal Paired: 79,429,315 (62.02%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 48,643,462 (37.98%)
 Ligation Motif Present: 12,125,937 (9.47%)
Alignable (Normal+Chimeric Paired): 79,429,315 (62.02%)
Unique Reads: 73,352,867 (57.27%)
PCR Duplicates: 6,026,562 (4.71%)
Optical Duplicates: 49,886 (0.04%)
Library Complexity Estimate: 495,967,910
Intra-fragment Reads: 1,920,579 (1.50% / 2.62%)
Below MAPQ Threshold: 21,677,076 (16.93% / 29.55%)
Hi-C Contacts: 49,755,212 (38.85% / 67.83%)
 Ligation Motif Present: 1,041,300  (0.81% / 1.42%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 33,315,102  (26.01% / 45.42%)
Intra-chromosomal: 16,440,110  (12.84% / 22.41%)
Short Range (<20Kb): 4,657,865  (3.64% / 6.35%)
Long Range (>20Kb): 11,782,084  (9.20% / 16.06%)