Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -d /srv/scratch/marinovg/juicer-L1241-L1242-SSB01-a_amanitin-16h-symbB.v1.0.genome.FINAL-final-post-review-merge_debris_50kb -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/symbB.v1.0.genome.FINAL.merge_debris_50kb_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review-merge_debris_50kb/bwa-indexes/symbB.v1.0.genome.FINAL.merge_debris_50kb.fasta                                                                                                                        
Sequenced Read Pairs:  92,444,637
 Normal Paired: 57,210,211 (61.89%)
 Chimeric Paired: 0 (0.00%)
 Chimeric Ambiguous: 0 (0.00%)
 Unmapped: 35,234,426 (38.11%)
 Ligation Motif Present: 8,663,852 (9.37%)
Alignable (Normal+Chimeric Paired): 57,210,211 (61.89%)
Unique Reads: 53,453,076 (57.82%)
PCR Duplicates: 3,721,184 (4.03%)
Optical Duplicates: 35,951 (0.04%)
Library Complexity Estimate: 419,955,623
Intra-fragment Reads: 1,427,171 (1.54% / 2.67%)
Below MAPQ Threshold: 15,843,072 (17.14% / 29.64%)
Hi-C Contacts: 36,182,833 (39.14% / 67.69%)
 Ligation Motif Present: 749,814  (0.81% / 1.40%)
 3' Bias (Long Range): 67% - 33%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 24,186,827  (26.16% / 45.25%)
Intra-chromosomal: 11,996,006  (12.98% / 22.44%)
Short Range (<20Kb): 3,428,185  (3.71% / 6.41%)
Long Range (>20Kb): 8,567,716  (9.27% / 16.03%)