Experiment description: Juicer version 1.5.6; BWA 0.7.17-r1188; 20 threads; java version "1.8.0_131"; scripts/juicer.sh -t 20 -D /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533+L534-Symbiodinium_Hi-C -d /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/juicer-L533+L534-Symbiodinium_Hi-C -p /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/symbB.v1.0.genome_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_minutum_Clade_B1_Ver1.120123/bwa-indexes/symbB.v1.0.genome.fa                                                                                                                                                                                                                                              
Sequenced Read Pairs:  906,832,444
 Normal Paired: 499,421,801 (55.07%)
 Chimeric Paired: 7,227,966 (0.80%)
 Chimeric Ambiguous: 1,903,718 (0.21%)
 Unmapped: 398,278,959 (43.92%)
 Ligation Motif Present: 204,141,918 (22.51%)
Alignable (Normal+Chimeric Paired): 506,649,767 (55.87%)
Unique Reads: 474,434,843 (52.32%)
PCR Duplicates: 32,082,101 (3.54%)
Optical Duplicates: 132,823 (0.01%)
Library Complexity Estimate: 3,827,797,925
Intra-fragment Reads: 17,042,987 (1.88% / 3.59%)
Below MAPQ Threshold: 141,185,630 (15.57% / 29.76%)
Hi-C Contacts: 316,206,226 (34.87% / 66.65%)
 Ligation Motif Present: 31,968,692  (3.53% / 6.74%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 279,104,573  (30.78% / 58.83%)
Intra-chromosomal: 37,101,653  (4.09% / 7.82%)
Short Range (<20Kb): 30,211,523  (3.33% / 6.37%)
Long Range (>20Kb): 6,889,698  (0.76% / 1.45%)