Experiment description: Juicer version 1.5.6; BWA 0.7.5a-r405; 60 threads; java version "1.8.0_40"; scripts/juicer.sh -t 60 -D /srv/scratch/marinovg/juicer-L142+L533+L534-symbB.v1.0.genome.FINAL-final-post-review -d /srv/scratch/marinovg/juicer-L142+L533+L534-symbB.v1.0.genome.FINAL-final-post-review -p /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL.chrom.sizes -y /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/symbB.v1.0.genome.FINAL_MboI.txt -z /oak/stanford/groups/akundaje/marinovg/Symbiodinium/2019-03-10-NextSeq-run/final-post-review/bwa-indexes/symbB.v1.0.genome.FINAL.fasta                                                                                                                                                                                                                                                                                                            
Sequenced Read Pairs:  1,366,059,621
 Normal Paired: 842,782,483 (61.69%)
 Chimeric Paired: 37,862,692 (2.77%)
 Chimeric Ambiguous: 11,059,343 (0.81%)
 Unmapped: 474,355,103 (34.72%)
 Ligation Motif Present: 367,989,328 (26.94%)
Alignable (Normal+Chimeric Paired): 880,645,175 (64.47%)
Unique Reads: 766,891,913 (56.14%)
PCR Duplicates: 112,483,140 (8.23%)
Optical Duplicates: 1,270,122 (0.09%)
Library Complexity Estimate: 3,137,565,631
Intra-fragment Reads: 42,706,488 (3.13% / 5.57%)
Below MAPQ Threshold: 289,239,334 (21.17% / 37.72%)
Hi-C Contacts: 434,946,091 (31.84% / 56.72%)
 Ligation Motif Present: 93,758,792  (6.86% / 12.23%)
 3' Bias (Long Range): 77% - 23%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 256,213,290  (18.76% / 33.41%)
Intra-chromosomal: 178,732,801  (13.08% / 23.31%)
Short Range (<20Kb): 80,511,520  (5.89% / 10.50%)
Long Range (>20Kb): 98,220,604  (7.19% / 12.81%)