L522+L523-WGBS-34C.Bismark_v0.19.0.bowtie2.clip.merged.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 39714042 lines in total Total number of methylation call strings processed: 39714042 Final Cytosine Methylation Report ================================= Total number of C's analysed: 424998514 Total methylated C's in CpG context: 40088451 Total methylated C's in CHG context: 1020427 Total methylated C's in CHH context: 2486089 Total C to T conversions in CpG context: 16416321 Total C to T conversions in CHG context: 82997367 Total C to T conversions in CHH context: 281989859 C methylated in CpG context: 70.9% C methylated in non-CpG context: 1.0%