L520+L521-WGBS-27C.Bismark_v0.19.0.bowtie2.clip.merged.bam Parameters used to extract methylation information: Bismark Extractor Version: v0.19.0 Bismark result file: single-end (SAM format) Output specified: comprehensive No overlapping methylation calls specified Methylation in CHG and CHH context will be merged into "non-CpG context" output Processed 70246376 lines in total Total number of methylation call strings processed: 70246376 Final Cytosine Methylation Report ================================= Total number of C's analysed: 759743918 Total methylated C's in CpG context: 64322927 Total methylated C's in CHG context: 1801922 Total methylated C's in CHH context: 4306585 Total C to T conversions in CpG context: 37375192 Total C to T conversions in CHG context: 148588524 Total C to T conversions in CHH context: 503348768 C methylated in CpG context: 63.2% C methylated in non-CpG context: 0.9%