/oak/stanford/groups/akundaje/marinovg/programs/STAR-2.5.3a/bin/Linux_x86_64_static/STAR --runMode genomeGenerate --limitSjdbInsertNsj 2000000 --genomeChrBinNbits 16 --genomeDir /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_microadriaticum_v1.0/STAR --genomeFastaFiles /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_microadriaticum_v1.0/sequence/Smic.genome.scaffold.final.fa --runThreadN 8 --sjdbGTFfile /oak/stanford/groups/akundaje/marinovg/genomes/Dinoflagellata/Symbiodinium_microadriaticum_v1.0/Smic.genome.annotation.gtf --sjdbOverhang 99 &