/oak/stanford/groups/akundaje/marinovg/programs/STAR-2.5.3a/bin/Linux_x86_64_static/STAR --runMode genomeGenerate --genomeDir /oak/stanford/groups/akundaje/marinovg/genomes/mm10/gencode/gencode.vM4/STAR --genomeFastaFiles /oak/stanford/groups/akundaje/marinovg/genomes/mm10/bowtie-indexes/mm10.fa --runThreadN 8 --sjdbGTFfile /oak/stanford/groups/akundaje/marinovg/genomes/mm10/gencode/gencode.vM4/gencode.vM4.annotation.gtf --sjdbOverhang 99 &