zcat GCA_002104985.1_Rhihy1_genomic.25mers.fa.gz | ~/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic -p 8 -v 2 -a -t --best --strata -f --sam-nh --sam - | ~/programs/samtools-0.1.18/samtools view -bT ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic.fa - | ~/programs/samtools-0.1.18/samtools sort - GCA_002104985.1_Rhihy1_genomic.25mers.unique
zcat GCA_002104985.1_Rhihy1_genomic.36mers.fa.gz | ~/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic -p 8 -v 2 -a -t --best --strata -f --sam-nh --sam - | ~/programs/samtools-0.1.18/samtools view -bT ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic.fa - | ~/programs/samtools-0.1.18/samtools sort - GCA_002104985.1_Rhihy1_genomic.36mers.unique
zcat GCA_002104985.1_Rhihy1_genomic.50mers.fa.gz | ~/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic -p 8 -v 2 -a -t --best --strata -f --sam-nh --sam - | ~/programs/samtools-0.1.18/samtools view -bT ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic.fa - | ~/programs/samtools-0.1.18/samtools sort - GCA_002104985.1_Rhihy1_genomic.50mers.unique
zcat GCA_002104985.1_Rhihy1_genomic.75mers.fa.gz | ~/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic -p 8 -v 2 -a -t --best --strata -f --sam-nh --sam - | ~/programs/samtools-0.1.18/samtools view -bT ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic.fa - | ~/programs/samtools-0.1.18/samtools sort - GCA_002104985.1_Rhihy1_genomic.75mers.unique
zcat GCA_002104985.1_Rhihy1_genomic.100mers.fa.gz | ~/programs/bowtie-1.0.1+hamrhein_nh_patch/bowtie ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic -p 8 -v 2 -a -t --best --strata -f --sam-nh --sam - | ~/programs/samtools-0.1.18/samtools view -bT ~/genomes/Fungi/Chytridiomycota/Rhizoclosmatium_globosum_JEL800-Rhihy1/bowtie-indexes/GCA_002104985.1_Rhihy1_genomic.fa - | ~/programs/samtools-0.1.18/samtools sort - GCA_002104985.1_Rhihy1_genomic.100mers.unique