## net.sf.picard.metrics.StringHeader
# net.sf.picard.sam.MarkDuplicates INPUT=[Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.bam] OUTPUT=Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.bam METRICS_FILE=Cln3-MS49-SCE-rep2_S5.2x36mers.unique.nochrM.dedup.metric REMOVE_DUPLICATES=true ASSUME_SORTED=true VALIDATION_STRINGENCY=LENIENT    PROGRAM_RECORD_ID=MarkDuplicates PROGRAM_GROUP_NAME=MarkDuplicates MAX_SEQUENCES_FOR_DISK_READ_ENDS_MAP=50000 MAX_FILE_HANDLES_FOR_READ_ENDS_MAP=8000 SORTING_COLLECTION_SIZE_RATIO=0.25 READ_NAME_REGEX=[a-zA-Z0-9]+:[0-9]:([0-9]+):([0-9]+):([0-9]+).* OPTICAL_DUPLICATE_PIXEL_DISTANCE=100 VERBOSITY=INFO QUIET=false COMPRESSION_LEVEL=5 MAX_RECORDS_IN_RAM=500000 CREATE_INDEX=false CREATE_MD5_FILE=false
## net.sf.picard.metrics.StringHeader
# Started on: Thu Sep 14 15:52:22 PDT 2017

## METRICS CLASS	net.sf.picard.sam.DuplicationMetrics
LIBRARY	UNPAIRED_READS_EXAMINED	READ_PAIRS_EXAMINED	UNMAPPED_READS	UNPAIRED_READ_DUPLICATES	READ_PAIR_DUPLICATES	READ_PAIR_OPTICAL_DUPLICATES	PERCENT_DUPLICATION	ESTIMATED_LIBRARY_SIZE
Unknown Library	0	822813	0	0	22053	13425	0.026802	37693846

## HISTOGRAM	java.lang.Double
BIN	VALUE
1.0	1.016406
2.0	2.010866
3.0	2.983853
4.0	3.935831
5.0	4.867253
6.0	5.778564
7.0	6.670198
8.0	7.542579
9.0	8.396124
10.0	9.231238
11.0	10.048321
12.0	10.84776
13.0	11.629938
14.0	12.395227
15.0	13.143992
16.0	13.876589
17.0	14.593367
18.0	15.294669
19.0	15.980828
20.0	16.652171
21.0	17.309018
22.0	17.951683
23.0	18.580471
24.0	19.195681
25.0	19.797608
26.0	20.386538
27.0	20.962752
28.0	21.526524
29.0	22.078123
30.0	22.617811
31.0	23.145846
32.0	23.66248
33.0	24.167959
34.0	24.662523
35.0	25.146408
36.0	25.619845
37.0	26.083059
38.0	26.536272
39.0	26.979699
40.0	27.413551
41.0	27.838035
42.0	28.253353
43.0	28.659704
44.0	29.057281
45.0	29.446273
46.0	29.826866
47.0	30.199241
48.0	30.563576
49.0	30.920044
50.0	31.268815
51.0	31.610055
52.0	31.943927
53.0	32.27059
54.0	32.590199
55.0	32.902907
56.0	33.208864
57.0	33.508214
58.0	33.8011
59.0	34.087662
60.0	34.368037
61.0	34.642357
62.0	34.910755
63.0	35.173357
64.0	35.430289
65.0	35.681673
66.0	35.92763
67.0	36.168275
68.0	36.403724
69.0	36.63409
70.0	36.859481
71.0	37.080006
72.0	37.295769
73.0	37.506873
74.0	37.713419
75.0	37.915505
76.0	38.113228
77.0	38.306681
78.0	38.495957
79.0	38.681147
80.0	38.862337
81.0	39.039616
82.0	39.213066
83.0	39.382772
84.0	39.548813
85.0	39.711268
86.0	39.870216
87.0	40.025732
88.0	40.17789
89.0	40.326763
90.0	40.472421
91.0	40.614934
92.0	40.754369
93.0	40.890794
94.0	41.024274
95.0	41.154871
96.0	41.282648
97.0	41.407666
98.0	41.529985
99.0	41.649663
100.0	41.766756