python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1105_SCD_0min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1105_SCD_0min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1105_SCD_0min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1105_SCD_0min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1105_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1105_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1105_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1105_SCD_45min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_00min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_00min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_00min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_00min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_05min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_05min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_05min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_05min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_10min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_10min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_10min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_10min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_20min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_20min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_20min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_20min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp251216_MS1106_SCD_45min-1uM-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp251216_MS1106_SCD_45min-1uM-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_2min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCD_2min-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_2min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCD_2min-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_5min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCD_5min-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_5min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCD_5min-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_no-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCD_no-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCD_no-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCD_no-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_2min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_2min-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_2min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_2min-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_5min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_5min-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_5min-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_5min-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_no-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_no-EU_input.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-04-01-exp260217_MS8_SCGE_no-EU_input.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-04-01-exp260217_MS8_SCGE_no-EU_input.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength