python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L06_exp251120_MS8_SCD_0min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_251123L06_exp251120_MS8_SCD_0min-Torin.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L06_exp251120_MS8_SCD_0min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_251123L06_exp251120_MS8_SCD_0min-Torin.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L07_exp251120_MS8_SCD_5min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_251123L07_exp251120_MS8_SCD_5min-Torin.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L07_exp251120_MS8_SCD_5min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_251123L07_exp251120_MS8_SCD_5min-Torin.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L08_exp251120_MS8_SCD_10min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_251123L08_exp251120_MS8_SCD_10min-Torin.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L08_exp251120_MS8_SCD_10min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_251123L08_exp251120_MS8_SCD_10min-Torin.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L09_exp251120_MS8_SCD_20min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_251123L09_exp251120_MS8_SCD_20min-Torin.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L09_exp251120_MS8_SCD_20min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_251123L09_exp251120_MS8_SCD_20min-Torin.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L10_exp251120_MS8_SCD_45min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_251123L10_exp251120_MS8_SCD_45min-Torin.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_251123L10_exp251120_MS8_SCD_45min-Torin.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_251123L10_exp251120_MS8_SCD_45min-Torin.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L12_exp251216_MS1106_SCD_10min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_260107L12_exp251216_MS1106_SCD_10min-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L12_exp251216_MS1106_SCD_10min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_260107L12_exp251216_MS1106_SCD_10min-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L13_exp251216_MS1106_SCD_20min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_260107L13_exp251216_MS1106_SCD_20min-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L13_exp251216_MS1106_SCD_20min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_260107L13_exp251216_MS1106_SCD_20min-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L14_exp251216_MS1106_SCD_45min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2026-02-14-LHG_260107L14_exp251216_MS1106_SCD_45min-1NM-PP1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2026-02-14-LHG_260107L14_exp251216_MS1106_SCD_45min-1NM-PP1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2026-02-14-LHG_260107L14_exp251216_MS1106_SCD_45min-1NM-PP1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength