Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2026-02-14-DNA

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]PEInsertDistFromBAM.sh2026-02-15 05:33 6.3K 
[ ]RPM-RPKM-files.tar.gz2026-02-15 08:33 55M 
[ ]SAMstats.2x36mers.ERMTOC.table2026-02-15 08:00 2.1K 
[ ]SAMstats.2x36mers.table2026-02-15 08:00 1.9K 
[ ]SAMstats.files2026-02-15 08:00 9.6K 
[ ]SAMstats.nochrM.1x36mers.table2026-02-15 08:00 2.1K 
[ ]SAMstats.nochrM.table2026-02-15 08:00 2.1K 
[TXT]SAMstats.sh2026-02-15 05:33 24K 
[ ]SAMstats.table2026-02-15 08:00 6.3K 
[ ]SAMstats.tar.gz2026-02-15 08:00 2.5K 
[ ]TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.2x36mers.unique.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.2x36mers.unique.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.Candida.RPKM.files2026-02-15 05:33 1.4K 
[ ]TSS-250bp-350bp.Candida.RPKM.table2026-02-15 08:32 1.0M 
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[ ]TSS-250bp-350bp.Candida.RPM.table2026-02-15 08:32 1.0M 
[ ]TSS-250bp-350bp.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-15 05:33 1.6K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-15 08:33 680K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-15 05:33 1.6K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-15 08:33 680K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 1.5K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-15 08:33 701K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 1.5K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-15 08:33 701K 
[ ]TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 1.6K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-15 08:33 677K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 1.6K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-15 08:33 676K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2026-02-15 05:33 1.4K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.table2026-02-15 08:32 1.1M 
[ ]TSS-250bp-350bp.sacCer3.RPM.files2026-02-15 05:33 1.4K 
[ ]TSS-250bp-350bp.sacCer3.RPM.table2026-02-15 08:32 1.1M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2026-02-15 05:33 1.5K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2026-02-15 08:33 1.0M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2026-02-15 05:33 1.5K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-15 05:33 1.6K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-15 05:33 1.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-15 08:33 1.0M 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 1.5K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 1.5K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-15 08:33 1.1M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2026-02-15 05:33 1.4K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2026-02-15 08:33 1.1M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2026-02-15 05:33 1.4K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2026-02-15 08:33 1.1M 
[ ]TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.2x36mers.unique.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.2x36mers.unique.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.Candida.RPKM.files2026-02-15 05:33 1.4K 
[ ]TSS-upstream500bp.Candida.RPKM.table2026-02-15 08:32 1.0M 
[ ]TSS-upstream500bp.Candida.RPM.files2026-02-15 05:33 1.4K 
[ ]TSS-upstream500bp.Candida.RPM.table2026-02-15 08:32 1.0M 
[ ]TSS-upstream500bp.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-15 05:33 1.6K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-15 08:33 616K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-15 05:33 1.6K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2026-02-15 08:33 616K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 1.5K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-15 08:33 673K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 1.5K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-15 08:33 673K 
[ ]TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2026-02-15 05:33 1.6K 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2026-02-15 08:33 649K 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2026-02-15 05:33 1.6K 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2026-02-15 08:33 649K 
[ ]TSS-upstream500bp.sacCer3.RPKM.files2026-02-15 05:33 1.4K 
[ ]TSS-upstream500bp.sacCer3.RPKM.table2026-02-15 08:32 1.1M 
[ ]TSS-upstream500bp.sacCer3.RPM.files2026-02-15 05:33 1.4K 
[ ]TSS-upstream500bp.sacCer3.RPM.table2026-02-15 08:32 1.1M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2026-02-15 05:33 1.5K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2026-02-15 08:33 1.0M 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files2026-02-15 05:33 0  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2026-02-15 05:33 1.6K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2026-02-15 08:33 1.0M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2026-02-15 05:33 1.6K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2026-02-15 05:33 1.4K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2026-02-15 08:33 1.1M 
[TXT]bedRPKMfromBAM.sh2026-02-15 05:33 328K 
[TXT]columnrename.sh2026-02-15 05:33 6.1K 
[ ]commands.config2026-02-15 05:33 1.6K 
[TXT]countlines.sh2026-02-15 05:33 1.2K 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2026-02-15 08:08 339K 
[ ]cumulativeGeneProfiles.Candida.500bp.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2026-02-15 08:08 679K 
[ ]cumulativeGeneProfiles.Candida.1000bp.table2026-02-15 08:05 679K 
[ ]cumulativeGeneProfiles.Candida.files2026-02-15 05:33 1.4K 
[ ]cumulativeGeneProfiles.S_pombe.500bp.smooth10.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.500bp.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table2026-02-15 08:02 13K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table2026-02-15 08:02 28K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.files2026-02-15 05:33 0  
[ ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.sacCer3-fullFragmentMidPoint.files2026-02-15 05:33 0  
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2026-02-15 08:04 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2026-02-15 08:03 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2026-02-15 08:08 679K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2026-02-15 08:03 679K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2026-02-15 08:07 667K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2026-02-15 08:07 657K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2026-02-15 08:07 679K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2026-02-15 08:07 679K 
[ ]cumulativeGeneProfiles.sacCer3.files2026-02-15 05:33 1.2K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2026-02-15 08:06 339K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2026-02-15 08:08 679K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2026-02-15 08:08 679K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2026-02-15 08:04 117K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2026-02-15 08:06 115K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2026-02-15 08:07 254K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2026-02-15 08:05 244K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2026-02-15 08:07 339K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2026-02-15 08:08 339K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2026-02-15 08:07 680K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2026-02-15 08:08 679K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2026-02-15 05:33 1.4K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.smooth10.table2026-02-15 08:06 13K 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.smooth10.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.smooth10.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.smooth10.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.1000bp.table2026-02-15 08:06 28K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.smooth10.table2026-02-15 08:05 13K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.500bp.table2026-02-15 08:06 13K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile5.1000bp.smooth10.table2026-02-15 08:06 28K 
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[TXT]signalAroundCoordinate.sh2026-02-15 05:33 42K 
[TXT]wigtobigwig.sh2026-02-15 05:33 33K 
[ ]z2026-02-15 08:01 38K 
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