python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L01_exp251028_RPE1_ChIP_1_INPUT_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L01_exp251028_RPE1_ChIP_1_INPUT_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L02_exp251028_RPE1_ChIP_1_INPUT_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L02_exp251028_RPE1_ChIP_1_INPUT_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L03_exp251111_RPE1_ChIP_2_INPUT_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L03_exp251111_RPE1_ChIP_2_INPUT_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L04_exp251111_RPE1_ChIP_2_INPUT_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L04_exp251111_RPE1_ChIP_2_INPUT_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L05_exp251028_RPE1_ChIP_1_ChIP_RNAPII_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L05_exp251028_RPE1_ChIP_1_ChIP_RNAPII_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L06_exp251028_RPE1_ChIP_1_ChIP_RNAPII_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L06_exp251028_RPE1_ChIP_1_ChIP_RNAPII_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L01_exp251028_RPE1_ChIP_1_INPUT_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L01_exp251028_RPE1_ChIP_1_INPUT_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L02_exp251028_RPE1_ChIP_1_INPUT_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L02_exp251028_RPE1_ChIP_1_INPUT_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L03_exp251111_RPE1_ChIP_2_INPUT_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L03_exp251111_RPE1_ChIP_2_INPUT_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L04_exp251111_RPE1_ChIP_2_INPUT_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L04_exp251111_RPE1_ChIP_2_INPUT_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L05_exp251028_RPE1_ChIP_1_ChIP_RNAPII_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L05_exp251028_RPE1_ChIP_1_ChIP_RNAPII_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L06_exp251028_RPE1_ChIP_1_ChIP_RNAPII_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L06_exp251028_RPE1_ChIP_1_ChIP_RNAPII_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L07_exp251028_RPE1_ChIP_1_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L07_exp251028_RPE1_ChIP_1_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L08_exp251028_RPE1_ChIP_1_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L08_exp251028_RPE1_ChIP_1_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L09_exp251111_RPE1_ChIP_2_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L09_exp251111_RPE1_ChIP_2_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L10_exp251111_RPE1_ChIP_2_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L10_exp251111_RPE1_ChIP_2_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L11_exp251111_RPE1_ChIP_2_ChIP_S5P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L11_exp251111_RPE1_ChIP_2_ChIP_S5P_DMSO.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L12_exp251111_RPE1_ChIP_2_ChIP_S5P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L12_exp251111_RPE1_ChIP_2_ChIP_S5P_TPL.2x75mers.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L07_exp251028_RPE1_ChIP_1_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L07_exp251028_RPE1_ChIP_1_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L08_exp251028_RPE1_ChIP_1_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L08_exp251028_RPE1_ChIP_1_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L09_exp251111_RPE1_ChIP_2_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L09_exp251111_RPE1_ChIP_2_ChIP_S2P_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L10_exp251111_RPE1_ChIP_2_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L10_exp251111_RPE1_ChIP_2_ChIP_S2P_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L11_exp251111_RPE1_ChIP_2_ChIP_S5P_DMSO.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L11_exp251111_RPE1_ChIP_2_ChIP_S5P_DMSO.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2026-01-03-MS251125L12_exp251111_RPE1_ChIP_2_ChIP_S5P_TPL.2x75mers.hg38+dm6.unique.bam SAMstats-2026-01-03-MS251125L12_exp251111_RPE1_ChIP_2_ChIP_S5P_TPL.2x75mers.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired