Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2026-01-03-ChIP-fly-human-reprocess

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[ ]2026-01-03-ChIP-fly-human.pdf2026-01-14 04:07 681K 
[ ]2026-01-03-ChIP-fly-human.pptx2026-01-14 04:07 734K 
[TXT]PEInsertDistFromBAM.sh2026-01-14 00:32 7.8K 
[ ]RPM-RPKM-files.tar.gz2026-01-14 20:29 208M 
[ ]SAMstats.files2026-01-14 03:58 3.7K 
[TXT]SAMstats.sh2026-01-14 00:48 9.5K 
[ ]SAMstats.table2026-01-14 03:58 2.3K 
[ ]SAMstats.tar.gz2026-01-14 03:59 1.4K 
[ ]TSS-2kbp.dm6.RPKM.files2026-01-14 00:53 2.0K 
[ ]TSS-2kbp.dm6.RPKM.table2026-01-14 20:28 5.1M 
[ ]TSS-2kbp.dm6.RPM.files2026-01-14 00:53 2.0K 
[ ]TSS-2kbp.dm6.RPM.table2026-01-14 20:28 5.0M 
[ ]TSS-2kbp.dm6.midPoint.RPKM.files2026-01-14 00:53 2.1K 
[ ]TSS-2kbp.dm6.midPoint.RPKM.table2026-01-14 20:28 5.1M 
[ ]TSS-2kbp.dm6.midPoint.RPM.files2026-01-14 00:53 2.1K 
[ ]TSS-2kbp.dm6.midPoint.RPM.table2026-01-14 20:28 5.0M 
[ ]TSS-2kbp.hg38.RPKM.files2026-01-14 00:54 2.0K 
[ ]TSS-2kbp.hg38.RPKM.table2026-01-14 20:28 7.4M 
[ ]TSS-2kbp.hg38.RPM.files2026-01-14 00:54 2.0K 
[ ]TSS-2kbp.hg38.RPM.table2026-01-14 20:28 7.2M 
[ ]TSS-2kbp.hg38.midPoint.RPKM.files2026-01-14 00:53 2.1K 
[ ]TSS-2kbp.hg38.midPoint.RPKM.table2026-01-14 20:28 7.4M 
[ ]TSS-2kbp.hg38.midPoint.RPM.files2026-01-14 00:54 2.1K 
[ ]TSS-2kbp.hg38.midPoint.RPM.table2026-01-14 20:28 7.2M 
[ ]TSS-500bp.dm6.RPKM.files2026-01-14 00:44 2.0K 
[ ]TSS-500bp.dm6.RPKM.table2026-01-14 20:28 4.7M 
[ ]TSS-500bp.dm6.RPM.files2026-01-14 00:44 2.0K 
[ ]TSS-500bp.dm6.RPM.table2026-01-14 20:28 4.7M 
[ ]TSS-500bp.dm6.midPoint.RPKM.files2026-01-14 00:43 2.1K 
[ ]TSS-500bp.dm6.midPoint.RPKM.table2026-01-14 20:28 4.6M 
[ ]TSS-500bp.dm6.midPoint.RPM.files2026-01-14 00:44 2.1K 
[ ]TSS-500bp.dm6.midPoint.RPM.table2026-01-14 20:28 4.6M 
[ ]TSS-500bp.hg38.RPKM.files2026-01-14 00:44 2.1K 
[ ]TSS-500bp.hg38.RPKM.table2026-01-14 20:28 6.7M 
[ ]TSS-500bp.hg38.RPM.files2026-01-14 00:44 2.0K 
[ ]TSS-500bp.hg38.RPM.table2026-01-14 20:28 6.7M 
[ ]TSS-500bp.hg38.midPoint.RPKM.files2026-01-14 00:44 2.2K 
[ ]TSS-500bp.hg38.midPoint.RPKM.table2026-01-14 20:28 6.5M 
[ ]TSS-500bp.hg38.midPoint.RPM.files2026-01-14 00:44 2.1K 
[ ]TSS-500bp.hg38.midPoint.RPM.table2026-01-14 20:28 6.5M 
[TXT]bedRPKMfromBAM.sh2026-01-14 18:32 177K 
[TXT]columnrename.sh2026-01-14 00:40 8.7K 
[ ]cumulativeGeneProfiles.dm6.Drosophila_melanogaster.BDGP6.90.fixed.1kbp.table2026-01-14 02:22 1.1M 
[ ]cumulativeGeneProfiles.dm6.Drosophila_melanogaster.BDGP6.90.fixed.2kbp.table2026-01-14 02:31 2.1M 
[ ]cumulativeGeneProfiles.dm6.Drosophila_melanogaster.BDGP6.90.fixed.500bp.table2026-01-14 02:33 538K 
[ ]cumulativeGeneProfiles.dm6.files2026-01-14 00:44 1.9K 
[ ]cumulativeGeneProfiles.hg38.2016-11-16-refFlat.1kbp.table2026-01-14 03:08 1.1M 
[ ]cumulativeGeneProfiles.hg38.2016-11-16-refFlat.2kbp.table2026-01-14 03:33 2.2M 
[ ]cumulativeGeneProfiles.hg38.2016-11-16-refFlat.500bp.table2026-01-14 03:06 559K 
[ ]cumulativeGeneProfiles.hg38.files2026-01-14 00:44 1.9K 
[ ]datasets_stats.xls2026-01-14 04:00 62K 
[ ]genes-500bp-1kbp-ext.dm6.RPKM.files2026-01-14 18:48 2.1K 
[ ]genes-500bp-1kbp-ext.dm6.RPKM.table2026-01-14 20:28 3.5M 
[ ]genes-500bp-1kbp-ext.dm6.RPM.files2026-01-14 18:48 2.1K 
[ ]genes-500bp-1kbp-ext.dm6.RPM.table2026-01-14 20:28 3.4M 
[ ]genes-500bp-1kbp-ext.dm6.RPM.table.summed2026-01-14 20:28 863  
[ ]genes-500bp-1kbp-ext.dm6.midPoint.RPKM.files2026-01-14 18:48 2.3K 
[ ]genes-500bp-1kbp-ext.dm6.midPoint.RPKM.table2026-01-14 20:28 3.5M 
[ ]genes-500bp-1kbp-ext.dm6.midPoint.RPM.files2026-01-14 18:48 2.2K 
[ ]genes-500bp-1kbp-ext.dm6.midPoint.RPM.table2026-01-14 20:28 3.4M 
[ ]genes-500bp-1kbp-ext.dm6.midPoint.RPM.table.summed2026-01-14 20:28 864  
[ ]genes-500bp-1kbp-ext.hg38.RPKM.files2026-01-14 18:49 2.2K 
[ ]genes-500bp-1kbp-ext.hg38.RPKM.table2026-01-14 20:28 6.0M 
[ ]genes-500bp-1kbp-ext.hg38.RPM.files2026-01-14 18:49 2.1K 
[ ]genes-500bp-1kbp-ext.hg38.RPM.table2026-01-14 20:28 5.7M 
[ ]genes-500bp-1kbp-ext.hg38.RPM.table.summed2026-01-14 20:28 862  
[ ]genes-500bp-1kbp-ext.hg38.midPoint.RPKM.files2026-01-14 18:49 2.3K 
[ ]genes-500bp-1kbp-ext.hg38.midPoint.RPKM.table2026-01-14 20:28 6.0M 
[ ]genes-500bp-1kbp-ext.hg38.midPoint.RPM.files2026-01-14 18:49 2.3K 
[ ]genes-500bp-1kbp-ext.hg38.midPoint.RPM.table2026-01-14 20:28 5.7M 
[ ]genes-500bp-1kbp-ext.hg38.midPoint.RPM.table.summed2026-01-14 20:28 864  
[ ]genes.dm6.RPKM.files2026-01-14 00:43 2.0K 
[ ]genes.dm6.RPKM.table2026-01-14 20:28 3.3M 
[ ]genes.dm6.RPM.files2026-01-14 00:43 2.0K 
[ ]genes.dm6.RPM.table2026-01-14 20:28 3.3M 
[ ]genes.dm6.RPM.table.summed2026-01-14 20:28 863  
[ ]genes.dm6.midPoint.RPKM.files2026-01-14 00:43 2.1K 
[ ]genes.dm6.midPoint.RPKM.table2026-01-14 20:28 3.3M 
[ ]genes.dm6.midPoint.RPM.files2026-01-14 00:43 2.1K 
[ ]genes.dm6.midPoint.RPM.table2026-01-14 20:28 3.2M 
[ ]genes.dm6.midPoint.RPM.table.summed2026-01-14 20:28 863  
[ ]genes.hg38.RPKM.files2026-01-14 00:43 2.0K 
[ ]genes.hg38.RPKM.table2026-01-14 20:28 5.8M 
[ ]genes.hg38.RPM.files2026-01-14 00:43 2.0K 
[ ]genes.hg38.RPM.table2026-01-14 20:28 5.6M 
[ ]genes.hg38.RPM.table.summed2026-01-14 20:28 862  
[ ]genes.hg38.midPoint.RPKM.files2026-01-14 00:43 2.1K 
[ ]genes.hg38.midPoint.RPKM.table2026-01-14 20:28 5.7M 
[ ]genes.hg38.midPoint.RPM.files2026-01-14 00:43 2.1K 
[ ]genes.hg38.midPoint.RPM.table2026-01-14 20:28 5.5M 
[ ]genes.hg38.midPoint.RPM.table.summed2026-01-14 20:28 863  
[TXT]makewiggle.sh2026-01-14 00:48 9.8K 
[TXT]map.sh2026-01-14 00:28 9.5K 
[TXT]samtools-index.sh2026-01-14 00:31 2.0K 
[TXT]wigtobigwig.sh2026-01-14 00:40 8.7K 
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