Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2025-09-29-DNA
Name
Last modified
Size
Description
Parent Directory
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PEInsertDistFromBAM.sh
2025-09-29 14:52
9.4K
RPM-RPKM-files.tar.gz
2025-09-29 15:44
81M
SAMstats.2x36mers.ERMTOC.table
2025-09-29 15:28
3.2K
SAMstats.2x36mers.table
2025-09-29 15:28
2.9K
SAMstats.files
2025-09-29 15:28
14K
SAMstats.nochrM.1x36mers.table
2025-09-29 15:28
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SAMstats.nochrM.table
2025-09-29 15:28
3.1K
SAMstats.sh
2025-09-29 14:52
35K
SAMstats.table
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SAMstats.tar.gz
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TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-250bp-350bp.2x36mers.unique.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.2x36mers.unique.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-250bp-350bp.Candida.RPKM.files
2025-09-29 14:52
2.1K
TSS-250bp-350bp.Candida.RPKM.table
2025-09-29 15:43
1.2M
TSS-250bp-350bp.Candida.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.Candida.RPM.table
2025-09-29 15:43
1.2M
TSS-250bp-350bp.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.S_pombe.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files
2025-09-29 14:52
2.3K
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table
2025-09-29 15:43
937K
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files
2025-09-29 14:52
2.3K
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table
2025-09-29 15:43
936K
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
2.2K
TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
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TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
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TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
944K
TSS-250bp-350bp.sacCer3.RPKM.files
2025-09-29 14:52
2.0K
TSS-250bp-350bp.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-250bp-350bp.sacCer3.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.sacCer3.RPM.table
2025-09-29 15:43
1.5M
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files
2025-09-29 14:52
2.2K
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table
2025-09-29 15:43
1.2M
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table
2025-09-29 15:43
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files
2025-09-29 14:52
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files
2025-09-29 14:52
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table
2025-09-29 15:43
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files
2025-09-29 14:52
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table
2025-09-29 15:43
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TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
2.2K
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
2.2K
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
1.5M
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files
2025-09-29 14:52
2.1K
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files
2025-09-29 14:52
2.1K
TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.2x36mers.unique.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.2x36mers.unique.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.Candida.RPKM.files
2025-09-29 14:52
2.2K
TSS-upstream500bp.Candida.RPKM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.Candida.RPM.files
2025-09-29 14:52
2.1K
TSS-upstream500bp.Candida.RPM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files
2025-09-29 14:52
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TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table
2025-09-29 15:43
848K
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files
2025-09-29 14:52
2.3K
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table
2025-09-29 15:43
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TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
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TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
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TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
940K
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
2.2K
TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
940K
TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.protein_coding.merged.2x36mers.unique.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
2.4K
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
906K
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
2.4K
TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
906K
TSS-upstream500bp.sacCer3.RPKM.files
2025-09-29 14:52
2.0K
TSS-upstream500bp.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.sacCer3.RPM.files
2025-09-29 14:52
2.0K
TSS-upstream500bp.sacCer3.RPM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files
2025-09-29 14:52
2.3K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files
2025-09-29 14:52
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TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files
2025-09-29 14:52
2.4K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files
2025-09-29 14:52
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TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table
2025-09-29 15:43
1.2M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPKM.files
2025-09-29 14:52
0
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.S_pombe.RPM.files
2025-09-29 14:52
0
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files
2025-09-29 14:52
2.3K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files
2025-09-29 14:52
2.2K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files
2025-09-29 14:52
2.2K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table
2025-09-29 15:43
1.5M
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files
2025-09-29 14:52
2.1K
TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table
2025-09-29 15:43
1.5M
X208SC25093053-Z01-F001/
2025-09-23 02:16
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bedRPKMfromBAM.sh
2025-09-29 14:52
491K
columnrename.sh
2025-09-29 14:52
9.2K
commands.config
2025-09-29 14:28
2.4K
countlines.sh
2025-09-29 14:52
1.8K
cumulativeGeneProfiles.Candida.500bp.smooth10.table
2025-09-29 15:41
502K
cumulativeGeneProfiles.Candida.500bp.table
2025-09-29 15:41
502K
cumulativeGeneProfiles.Candida.1000bp.smooth10.table
2025-09-29 15:42
1.0M
cumulativeGeneProfiles.Candida.1000bp.table
2025-09-29 15:41
1.0M
cumulativeGeneProfiles.Candida.files
2025-09-29 14:52
2.1K
cumulativeGeneProfiles.S_pombe.500bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.500bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.1000bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table
2025-09-29 15:40
28K
cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.files
2025-09-29 14:52
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cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table
2025-09-29 15:40
13K
cumulativeGeneProfiles.S_pombe.mRNA.500bp.table
2025-09-29 15:40
13K
cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table
2025-09-29 15:40
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cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table
2025-09-29 15:40
28K
cumulativeGeneProfiles.sacCer3-fullFragmentMidPoint.files
2025-09-29 14:52
0
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table
2025-09-29 15:42
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table
2025-09-29 15:41
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table
2025-09-29 15:41
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table
2025-09-29 15:41
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table
2025-09-29 15:41
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table
2025-09-29 15:41
502K
cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table
2025-09-29 15:41
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table
2025-09-29 15:41
1.0M
cumulativeGeneProfiles.sacCer3.files
2025-09-29 14:52
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cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table
2025-09-29 15:42
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cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table
2025-09-29 15:42
1.0M
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table
2025-09-29 15:40
170K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table
2025-09-29 15:40
165K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table
2025-09-29 15:41
367K
cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table
2025-09-29 15:40
352K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table
2025-09-29 15:42
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table
2025-09-29 15:42
502K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table
2025-09-29 15:43
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table
2025-09-29 15:42
1.0M
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files
2025-09-29 14:52
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cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.smooth10.table
2025-09-29 15:40
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.500bp.table
2025-09-29 15:40
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.smooth10.table
2025-09-29 15:40
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.1000bp.table
2025-09-29 15:40
28K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.smooth10.table
2025-09-29 15:40
13K
cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.S_pombe.expression_quintile1.500bp.table
2025-09-29 15:40
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