python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L01-exp250721_RPE1_ChIP_1_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L01-exp250721_RPE1_ChIP_1_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L02-exp250721_RPE1_ChIP_1_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L02-exp250721_RPE1_ChIP_1_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L03-exp250721_RPE1_ChIP_2_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L03-exp250721_RPE1_ChIP_2_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L04-exp250721_RPE1_ChIP_2_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L04-exp250721_RPE1_ChIP_2_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L05-exp250721_RPE1_ChIP_1_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L05-exp250721_RPE1_ChIP_1_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L06-exp250721_RPE1_ChIP_1_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L06-exp250721_RPE1_ChIP_1_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L01-exp250721_RPE1_ChIP_1_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L01-exp250721_RPE1_ChIP_1_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L02-exp250721_RPE1_ChIP_1_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L02-exp250721_RPE1_ChIP_1_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L03-exp250721_RPE1_ChIP_2_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L03-exp250721_RPE1_ChIP_2_DMSO_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L04-exp250721_RPE1_ChIP_2_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L04-exp250721_RPE1_ChIP_2_TPL_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L05-exp250721_RPE1_ChIP_1_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L05-exp250721_RPE1_ChIP_1_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L06-exp250721_RPE1_ChIP_1_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L06-exp250721_RPE1_ChIP_1_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L07-exp250721_RPE1_ChIP_2_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L07-exp250721_RPE1_ChIP_2_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L08-exp250721_RPE1_ChIP_2_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L08-exp250721_RPE1_ChIP_2_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L09-exp250721_RPE1_ChIP_1_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L09-exp250721_RPE1_ChIP_1_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L10-exp250721_RPE1_ChIP_1_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L10-exp250721_RPE1_ChIP_1_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L11-exp250721_RPE1_ChIP_2_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L11-exp250721_RPE1_ChIP_2_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L12-exp250721_RPE1_ChIP_2_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L12-exp250721_RPE1_ChIP_2_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L07-exp250721_RPE1_ChIP_2_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L07-exp250721_RPE1_ChIP_2_DMSO_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L08-exp250721_RPE1_ChIP_2_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L08-exp250721_RPE1_ChIP_2_TPL_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L09-exp250721_RPE1_ChIP_1_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L09-exp250721_RPE1_ChIP_1_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L10-exp250721_RPE1_ChIP_1_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L10-exp250721_RPE1_ChIP_1_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L11-exp250721_RPE1_ChIP_2_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L11-exp250721_RPE1_ChIP_2_DMSO_Beads.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250827L12-exp250721_RPE1_ChIP_2_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250827L12-exp250721_RPE1_ChIP_2_TPL_Beads.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L13-exp250728_RPE1_ChIP_Palbo-18h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L13-exp250728_RPE1_ChIP_Palbo-18h_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L14-exp250728_RPE1_ChIP_Palbo-48h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L14-exp250728_RPE1_ChIP_Palbo-48h_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L15-exp250728_RPE1_ChIP_Palbo-96h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L15-exp250728_RPE1_ChIP_Palbo-96h_INPUT.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L16-exp250728_RPE1_ChIP_Palbo-18h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L16-exp250728_RPE1_ChIP_Palbo-18h_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L17-exp250728_RPE1_ChIP_Palbo-48h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L17-exp250728_RPE1_ChIP_Palbo-48h_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L18-exp250728_RPE1_ChIP_Palbo-96h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L18-exp250728_RPE1_ChIP_Palbo-96h_ChIP.2x150mers-trimmed.hg38+dm6.unique.dm6 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/dm6.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L13-exp250728_RPE1_ChIP_Palbo-18h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L13-exp250728_RPE1_ChIP_Palbo-18h_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L14-exp250728_RPE1_ChIP_Palbo-48h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L14-exp250728_RPE1_ChIP_Palbo-48h_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L15-exp250728_RPE1_ChIP_Palbo-96h_INPUT.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L15-exp250728_RPE1_ChIP_Palbo-96h_INPUT.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L16-exp250728_RPE1_ChIP_Palbo-18h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L16-exp250728_RPE1_ChIP_Palbo-18h_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L17-exp250728_RPE1_ChIP_Palbo-48h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L17-exp250728_RPE1_ChIP_Palbo-48h_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired
python /oak/stanford/groups/akundaje/marinovg/code/SAMstats.py 2025-09-16-MS250902L18-exp250728_RPE1_ChIP_Palbo-96h_ChIP.2x150mers-trimmed.hg38+dm6.unique.bam SAMstats-2025-09-16-MS250902L18-exp250728_RPE1_ChIP_Palbo-96h_ChIP.2x150mers-trimmed.hg38+dm6.unique.hg38 -bam /oak/stanford/groups/akundaje/marinovg/genomes/hg38+dm6/hg38.chrom.sizes /oak/stanford/groups/akundaje/marinovg/programs/samtools-0.1.18/samtools -paired