~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.minus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.wig /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.RPM.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS111-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS119-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS48-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS51-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS6-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-1-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-2-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig
~/programs/UCSC-utils-2017-07-13/wigToBigWig RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.wig  /oak/stanford/groups/akundaje/marinovg/genomes/hg38/hg38.chrom.sizes RPE1-SS77-3-STAR-2.5.3a/STAR-2.5.3a-Aligned.sortedByCoord.out.unique.counts.plus.5p.bigWig