python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L01_exp241025_MS69_SCD_1hr-arrest_Torin_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L01_exp241025_MS69_SCD_1hr-arrest_Torin_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L01_exp241025_MS69_SCD_1hr-arrest_Torin_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L01_exp241025_MS69_SCD_1hr-arrest_Torin_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L02_exp241025_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L02_exp241025_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L02_exp241025_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L02_exp241025_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L03_exp241025_MS69_SCD_4.75hr-arrest_Torin_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L03_exp241025_MS69_SCD_4.75hr-arrest_Torin_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L03_exp241025_MS69_SCD_4.75hr-arrest_Torin_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L03_exp241025_MS69_SCD_4.75hr-arrest_Torin_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L04_exp241025_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L04_exp241025_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L04_exp241025_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L04_exp241025_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L05_exp241002_MS69_SCD_1hr-arrest_Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L05_exp241002_MS69_SCD_1hr-arrest_Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L05_exp241002_MS69_SCD_1hr-arrest_Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L05_exp241002_MS69_SCD_1hr-arrest_Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L06_exp241002_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L06_exp241002_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L06_exp241002_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L06_exp241002_MS69_SCD_1hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L07_exp241002_MS69_SCD_4.75hr-arrest_Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L07_exp241002_MS69_SCD_4.75hr-arrest_Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L07_exp241002_MS69_SCD_4.75hr-arrest_Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L07_exp241002_MS69_SCD_4.75hr-arrest_Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L08_exp241002_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L08_exp241002_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L08_exp241002_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L08_exp241002_MS69_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L09_exp241010_MS756_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L09_exp241010_MS756_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L09_exp241010_MS756_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L09_exp241010_MS756_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L10_exp241010_MS756_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L10_exp241010_MS756_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L10_exp241010_MS756_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L10_exp241010_MS756_SCD_1hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L11_exp241010_MS756_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L11_exp241010_MS756_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L11_exp241010_MS756_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L11_exp241010_MS756_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L12_exp241010_MS756_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L12_exp241010_MS756_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L12_exp241010_MS756_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L12_exp241010_MS756_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L13_exp241010_MS791_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L13_exp241010_MS791_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L13_exp241010_MS791_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L13_exp241010_MS791_SCD_1hr-arrest_PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L14_exp241010_MS791_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L14_exp241010_MS791_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L14_exp241010_MS791_SCD_1hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L14_exp241010_MS791_SCD_1hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L15_exp241010_MS791_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L15_exp241010_MS791_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L15_exp241010_MS791_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L15_exp241010_MS791_SCD_4.75hr-arrest_PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L16_exp241010_MS791_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241210L16_exp241010_MS791_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241210L16_exp241010_MS791_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241210L16_exp241010_MS791_SCD_4.75hr-arrest_DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L01_exp241108_MS867_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L01_exp241108_MS867_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L01_exp241108_MS867_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L01_exp241108_MS867_SCD_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L02_exp241108_MS867_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L02_exp241108_MS867_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L02_exp241108_MS867_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L02_exp241108_MS867_SCD_1hr-Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L03_exp241108_MS867_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L03_exp241108_MS867_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L03_exp241108_MS867_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L03_exp241108_MS867_SCD_6hr-Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L04_exp241108_MS868_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L04_exp241108_MS868_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L04_exp241108_MS868_SCD_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L04_exp241108_MS868_SCD_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L05_exp241108_MS868_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L05_exp241108_MS868_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L05_exp241108_MS868_SCD_1hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L05_exp241108_MS868_SCD_1hr-Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L06_exp241108_MS868_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2025-01-14-MS241220L06_exp241108_MS868_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2025-01-14-MS241220L06_exp241108_MS868_SCD_6hr-Rapa_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2025-01-14-MS241220L06_exp241108_MS868_SCD_6hr-Rapa_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength