python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L04_exp240919_MS8_SCD_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS240926L04_exp240919_MS8_SCD_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L04_exp240919_MS8_SCD_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS240926L04_exp240919_MS8_SCD_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L05_exp240919_MS8_SCD-RAPA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS240926L05_exp240919_MS8_SCD-RAPA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L05_exp240919_MS8_SCD-RAPA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS240926L05_exp240919_MS8_SCD-RAPA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L06_exp240919_MS8_SCGE_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS240926L06_exp240919_MS8_SCGE_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS240926L06_exp240919_MS8_SCGE_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS240926L06_exp240919_MS8_SCGE_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L01_exp240822_MS902_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L01_exp240822_MS902_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L01_exp240822_MS902_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L01_exp240822_MS902_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L02_exp240822_MS902_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L02_exp240822_MS902_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L02_exp240822_MS902_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L02_exp240822_MS902_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L03_exp240822_MS903_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L03_exp240822_MS903_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L03_exp240822_MS903_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L03_exp240822_MS903_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L04_exp240822_MS903_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L04_exp240822_MS903_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L04_exp240822_MS903_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L04_exp240822_MS903_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L05_exp240822_MS904_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L05_exp240822_MS904_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L05_exp240822_MS904_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L05_exp240822_MS904_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L06_exp240822_MS904_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L06_exp240822_MS904_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L06_exp240822_MS904_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L06_exp240822_MS904_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L07_exp240822_MS905_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L07_exp240822_MS905_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L07_exp240822_MS905_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L07_exp240822_MS905_SCD_1hr-RAPA_1hr-PhIAA_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L08_exp240822_MS905_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L08_exp240822_MS905_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L08_exp240822_MS905_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L08_exp240822_MS905_SCD_1hr-RAPA_1hr-DMSO_gDNA.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L09_exp240828_MS69_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L09_exp240828_MS69_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L09_exp240828_MS69_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L09_exp240828_MS69_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L10_exp240828_MS69_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L10_exp240828_MS69_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L10_exp240828_MS69_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L10_exp240828_MS69_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L11_exp240828_MS69_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L11_exp240828_MS69_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L11_exp240828_MS69_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L11_exp240828_MS69_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L12_exp240828_MS69_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L12_exp240828_MS69_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L12_exp240828_MS69_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L12_exp240828_MS69_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L13_exp240828_MS69_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L13_exp240828_MS69_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L13_exp240828_MS69_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L13_exp240828_MS69_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L14_exp240828_MS69_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L14_exp240828_MS69_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L14_exp240828_MS69_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L14_exp240828_MS69_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L15_exp240828_MS497_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L15_exp240828_MS497_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L15_exp240828_MS497_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L15_exp240828_MS497_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L16_exp240828_MS497_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L16_exp240828_MS497_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L16_exp240828_MS497_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L16_exp240828_MS497_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L17_exp240828_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L17_exp240828_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L17_exp240828_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L17_exp240828_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L18_exp240828_MS497_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L18_exp240828_MS497_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L18_exp240828_MS497_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L18_exp240828_MS497_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L19_exp240828_MS497_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L19_exp240828_MS497_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L19_exp240828_MS497_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L19_exp240828_MS497_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L20_exp240828_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L20_exp240828_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L20_exp240828_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L20_exp240828_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L21_exp240607_MS501_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L21_exp240607_MS501_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L21_exp240607_MS501_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L21_exp240607_MS501_SCGE_1.5hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L22_exp240607_MS501_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L22_exp240607_MS501_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L22_exp240607_MS501_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L22_exp240607_MS501_SCGE_1.5hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L23_exp240607_MS501_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L23_exp240607_MS501_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L23_exp240607_MS501_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L23_exp240607_MS501_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L24_exp240607_MS501_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L24_exp240607_MS501_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L24_exp240607_MS501_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L24_exp240607_MS501_SCGE_8hr-arrest_1hr-DMSO_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L25_exp240607_MS501_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L25_exp240607_MS501_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L25_exp240607_MS501_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L25_exp240607_MS501_SCGE_8hr-arrest_1hr-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L26_exp240607_MS501_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-11-28-MS241011L26_exp240607_MS501_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-11-28-MS241011L26_exp240607_MS501_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-11-28-MS241011L26_exp240607_MS501_SCGE_8hr-arrest_30min-PhIAA_gDNA-A.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength