python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-1-MS240604L34.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-1-MS240604L34.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-1-MS240604L34.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-1-MS240604L34.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-2-MS240614L34R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-2-MS240614L34R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-2-MS240614L34R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-2-MS240614L34R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-3-MS240617L02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-3-MS240617L02.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-3-MS240617L02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-DMSO_gDNA-3-MS240617L02.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L33.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L33.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L33.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L33.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L33R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L33R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L33R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L33R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_2hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-1-MS240604L36.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-1-MS240604L36.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-1-MS240604L36.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-1-MS240604L36.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-2-MS240614L36R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-2-MS240614L36R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-2-MS240614L36R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-2-MS240614L36R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-3-MS240617L04.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-3-MS240617L04.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-3-MS240617L04.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-DMSO_gDNA-3-MS240617L04.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L35.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L35.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L35.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L35.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L35R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L35R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L35R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L35R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L03.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L03.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L03.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L03.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-1-MS240604L39.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-1-MS240604L39.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-1-MS240604L39.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-1-MS240604L39.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-2-MS240614L39R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-2-MS240614L39R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-2-MS240614L39R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-2-MS240614L39R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-3-MS240617L07.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-3-MS240617L07.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-3-MS240617L07.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_5hr-arrest_4hr-Rapamycin_gDNA-3-MS240617L07.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-1-MS240604L38.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-1-MS240604L38.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-1-MS240604L38.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-1-MS240604L38.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-2-MS240614L38R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-2-MS240614L38R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-2-MS240614L38R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-2-MS240614L38R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-3-MS240617L06.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-3-MS240617L06.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-3-MS240617L06.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-DMSO_gDNA-3-MS240617L06.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L37.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L37.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L37.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-1-MS240604L37.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L37R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L37R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L37R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-2-MS240614L37R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L05.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_1hr-Rapamycin_gDNA-3-MS240617L05.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-1-MS240604L40.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-1-MS240604L40.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-1-MS240604L40.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-1-MS240604L40.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-2-MS240614L40R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-2-MS240614L40R.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-2-MS240614L40R.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-2-MS240614L40R.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-3-MS240617L08.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-3-MS240617L08.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-3-MS240617L08.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240502_MS412_SCD-Met_8hr-arrest_7hr-Rapamycin_gDNA-3-MS240617L08.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L23.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L23.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L23.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L23.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L21.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L21.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L21.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L21.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L22.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L22.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L22.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L22.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L26.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L26.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L26.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L26.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L24.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L24.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L24.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L24.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L25.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L25.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L25.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240514_MS497_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L25.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L29.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L29.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L29.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240604L29.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L27.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L27.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L27.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240604L27.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L28.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L28.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L28.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240604L28.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L32.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L32.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L32.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240604L32.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L30.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L30.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L30.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240604L30.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L31.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L31.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L31.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240517_MS798_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240604L31.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L03.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L03.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L03.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L03.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L01.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L01.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L01.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L02.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L02.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L02.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L06.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L06.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L06.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L06.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L04.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L04.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L04.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L04.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L05.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L05.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS799_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L05.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L09.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L09.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L09.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_30min-PhIAA_gDNA-MS240618L09.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L07.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L07.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L07.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-DMSO_gDNA-MS240618L07.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L08.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L08.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L08.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_1.5hr-arrest_60min-PhIAA_gDNA-MS240618L08.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L12.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L12.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L12.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_30min-PhIAA_gDNA-MS240618L12.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L10.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L10.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L10.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-DMSO_gDNA-MS240618L10.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L11.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L11.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L11.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2024-07-09-exp240607_MS800_SCGE_8hr-arrest_60min-PhIAA_gDNA-MS240618L11.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength