python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA01_exp230501_A1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA01_exp230501_A1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA01_exp230501_A1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA01_exp230501_A1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA02_exp230501_A2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA02_exp230501_A2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA02_exp230501_A2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA02_exp230501_A2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA03_exp230501_A3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA03_exp230501_A3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA03_exp230501_A3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA03_exp230501_A3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA04_exp230501_A4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA04_exp230501_A4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA04_exp230501_A4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA04_exp230501_A4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA05_exp230502_B1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA05_exp230502_B1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA05_exp230502_B1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA05_exp230502_B1_CJW7357_060min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA06_exp230502_B2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA06_exp230502_B2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA06_exp230502_B2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA06_exp230502_B2_CJW7357_120min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA07_exp230502_B3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA07_exp230502_B3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA07_exp230502_B3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA07_exp230502_B3_CJW7357_200min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA08_exp230502_B4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA08_exp230502_B4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragmentMidPoint_50bp_Ecoli.wig
python /oak/stanford/groups/akundaje/marinovg/code/columnRename.py 2023-09-13-RNA08_exp230502_B4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment.wig 0 /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/Escherichia_coli_str._K-12_substr._MG1655.old_to_new 1 0 > 2023-09-13-RNA08_exp230502_B4_CJW7357_240min-arrest_total-RNA.2x36mers.Escherichia_coli_str._K-12_substr._MG1655.a.nochrM.ERMTOC.fragment_Ecoli.wig