python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L11_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L11_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L11_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L11_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L12_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L12_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L12_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L12_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L13_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L13_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L13_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L13_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L14_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L14_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L14_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L14_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L15_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L15_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L15_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L15_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L16_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L16_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L16_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L16_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L17_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L17_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L17_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L17_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L18_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L18_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L18_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L18_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L19_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L19_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L19_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L19_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L20_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L20_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L20_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L20_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L21_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L21_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L21_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L21_exp2023-05-22-230511_MS501_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L22_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L22_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L22_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L22_exp2023-05-22-230511_MS501_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L23_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L23_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L23_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L23_exp2023-05-22-230511_MS499_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L24_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L24_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L24_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L24_exp2023-05-22-230511_MS499_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L25_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L25_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L25_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L25_exp2023-05-22-230511_MS069_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L26_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L26_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L26_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L26_exp2023-05-22-230511_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L27_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L27_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L27_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L27_exp2023-05-22-230511_MS500_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L28_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L28_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L28_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L28_exp2023-05-22-230511_MS500_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L29_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L29_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L29_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L29_exp2023-05-22-230511_MS497_SCD-MET-1hr-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L30_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230515L30_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230515L30_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230515L30_exp2023-05-22-230511_MS497_SCD-MET-4hr45min-arrest_2uMPhIAA-45min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L05_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L05_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L05_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L05_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L06_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L06_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L06_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L06_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L07_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L07_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L07_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L07_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L08_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L08_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L08_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L08_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep1.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L09_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L09_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L09_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L09_exp2023-05-22-230516_MS069_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L10_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L10_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L10_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L10_exp2023-05-22-230516_MS069_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L11_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L11_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L11_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L11_exp2023-05-22-230516_MS756_SCD-MET-1hr-arrest_2uMPhIAA-55min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L12_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/sacCer3.chrom.sizes 2023-05-22-230518L12_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3.InsertLength
python /oak/stanford/groups/akundaje/marinovg/code/PEInsertDistFromBAM.py 2023-05-22-230518L12_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.sacCer3+C_glabrata_CBS138_current_chromosomes.a.bam /oak/stanford/groups/akundaje/marinovg/Stanford_bootcamp/combined_indexes/C_glabrata_CBS138_current_chromosomes.chrom.sizes 2023-05-22-230518L12_exp2023-05-22-230516_MS756_SCD-MET-4hr45min-arrest_2uMPhIAA-4hr-40min_DNA-rep2.2x36mers.C_glabrata_CBS138_current_chromosomes.InsertLength