Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2023-06-17-NextSeq

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]PEInsertDistFromBAM.sh2023-06-19 22:49 26K 
[ ]RPM-RPKM-files.tar.gz2023-06-20 11:47 197M 
[DIR]RPM-RPKM-files/2023-06-20 11:46 -  
[ ]SAMstats.2x36mers.ERMTOC.table2023-06-20 09:10 9.6K 
[ ]SAMstats.2x36mers.table2023-06-20 09:10 8.8K 
[ ]SAMstats.files2023-06-20 09:10 47K 
[ ]SAMstats.nochrM.1x36mers.table2023-06-20 09:10 9.3K 
[ ]SAMstats.nochrM.table2023-06-20 09:10 9.3K 
[TXT]SAMstats.sh2023-06-19 22:49 95K 
[ ]SAMstats.table2023-06-20 09:10 28K 
[ ]SAMstats.tar.gz2023-06-20 09:10 8.3K 
[ ]TSS-250bp-350bp.Candida.RPKM.files2023-06-19 22:49 7.1K 
[ ]TSS-250bp-350bp.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.Candida.RPM.files2023-06-19 22:49 7.0K 
[ ]TSS-250bp-350bp.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2023-06-19 22:49 7.5K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2023-06-20 10:44 1.9M 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2023-06-19 22:49 7.5K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2023-06-20 10:44 1.9M 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 2.0M 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 2.0M 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.7K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 2.0M 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.7K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 2.0M 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2023-06-19 22:49 6.8K 
[ ]TSS-250bp-350bp.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-250bp-350bp.sacCer3.RPM.files2023-06-19 22:49 6.8K 
[ ]TSS-250bp-350bp.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2023-06-19 22:49 7.6K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2023-06-19 22:49 7.5K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2023-06-19 22:49 7.1K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2023-06-19 22:49 7.0K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.Candida.RPKM.files2023-06-19 22:49 7.1K 
[ ]TSS-upstream500bp.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.Candida.RPM.files2023-06-19 22:49 7.1K 
[ ]TSS-upstream500bp.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2023-06-19 22:49 7.6K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2023-06-20 10:44 1.7M 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2023-06-19 22:49 7.6K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2023-06-20 10:44 1.7M 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.3K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 2.0M 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 2.0M 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.7K 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 1.9M 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.7K 
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 1.9M 
[ ]TSS-upstream500bp.sacCer3.RPKM.files2023-06-19 22:49 6.9K 
[ ]TSS-upstream500bp.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.sacCer3.RPM.files2023-06-19 22:49 6.8K 
[ ]TSS-upstream500bp.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2023-06-19 22:49 7.4K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2023-06-19 22:49 7.6K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2023-06-19 22:49 7.6K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2023-06-20 10:44 2.4M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.4K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2023-06-19 22:49 7.3K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2023-06-19 22:49 7.1K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table2023-06-20 10:44 2.9M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2023-06-19 22:49 7.1K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table2023-06-20 10:44 2.9M 
[TXT]bedRPKMfromBAM.sh2023-06-19 22:49 1.3M 
[TXT]columnrename.sh2023-06-19 22:49 26K 
[ ]commands.config2023-06-19 22:49 11K 
[TXT]countlines.sh2023-06-19 22:49 7.6K 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table2023-06-20 09:31 1.1M 
[ ]cumulativeGeneProfiles.Candida.500bp.table2023-06-20 09:31 1.1M 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table2023-06-20 09:33 2.3M 
[ ]cumulativeGeneProfiles.Candida.1000bp.table2023-06-20 09:31 2.3M 
[ ]cumulativeGeneProfiles.Candida.files2023-06-19 22:49 6.9K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table2023-06-20 09:27 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table2023-06-20 09:27 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table2023-06-20 09:27 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table2023-06-20 09:26 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2023-06-20 09:25 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table2023-06-20 09:25 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2023-06-20 09:25 2.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table2023-06-20 09:24 2.2M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2023-06-20 09:25 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table2023-06-20 09:25 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2023-06-20 09:26 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table2023-06-20 09:25 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.files2023-06-19 22:49 6.1K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table2023-06-20 09:30 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table2023-06-20 09:27 1.1M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table2023-06-20 09:30 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table2023-06-20 09:29 2.3M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table2023-06-20 09:26 379K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table2023-06-20 09:26 368K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table2023-06-20 09:27 820K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table2023-06-20 09:26 786K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table2023-06-20 09:32 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table2023-06-20 09:33 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.smooth10.table2023-06-20 09:35 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table2023-06-20 09:32 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2023-06-19 22:49 7.0K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table2023-06-20 09:31 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table2023-06-20 09:31 1.1M 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table2023-06-20 09:31 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.smooth10.table2023-06-20 09:29 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.500bp.table2023-06-20 09:29 1.1M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table2023-06-20 09:28 2.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile1.1000bp.table2023-06-20 09:28 2.2M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.500bp.smooth10.table2023-06-20 09:28 1.1M 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table2023-06-20 09:36 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.expression_quintile5.1000bp.table2023-06-20 09:29 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files2023-06-19 22:49 6.8K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table2023-06-20 09:38 1.1M 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table2023-06-20 09:36 2.3M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.smooth10.table2023-06-20 09:30 422K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.500bp.table2023-06-20 09:30 400K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.rRNA.RDN37.1000bp.smooth10.table2023-06-20 09:32 869K 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2023-06-19 22:49 6.2K 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.smooth10.table2023-06-20 09:28 460K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.500bp.table2023-06-20 09:28 426K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.smooth10.table2023-06-20 09:29 901K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.rRNA.RDN37.1000bp.table2023-06-20 09:28 843K 
[ ]datasets_stats.xls2023-06-20 09:15 411K 
[TXT]filterchrM.sh2023-06-19 22:49 21K 
[ ]genes.Candida.RPKM.files2023-06-19 22:49 6.7K 
[ ]genes.Candida.RPKM.table2023-06-20 10:43 2.3M 
[ ]genes.Candida.RPM.files2023-06-19 22:49 6.7K 
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[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2023-06-19 22:49 7.3K 
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[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2023-06-19 22:49 7.2K 
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.table2023-06-20 10:43 1.5M 
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2023-06-19 22:49 7.0K 
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