Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2021-07-17-ChIP-data-uniform-processing-additional

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[DIR]D073_181105L01_exp180712_MS01_input_R/2025-04-21 13:01 -  
[DIR]D074_181105L02_exp180712_MS80_input_R/2025-04-21 13:01 -  
[DIR]D075_181105L03_exp180712_MS81_input_R/2025-04-21 13:01 -  
[DIR]D076_181105L04_exp180712_MS63_0nM_input_R/2025-04-21 13:01 -  
[DIR]D077_181105L05_exp180712_MS63_10nM_input_R/2025-04-21 13:01 -  
[DIR]D078_181105L06_exp180712_MS63_30nM_input_R/2025-04-21 13:01 -  
[DIR]D079_190204L07_exp180712_MS01_AB20/2025-04-21 13:01 -  
[DIR]D080_190204L08_exp180712_MS80_AB20/2025-04-21 13:01 -  
[DIR]D081_190204L09_exp180712_MS81_AB20/2025-04-21 13:01 -  
[DIR]D082_190204L10_exp180712_MS63_0nM_AB20/2025-04-21 13:01 -  
[DIR]D083_190204L11_exp180712_MS63_10nM_AB20/2025-04-21 13:01 -  
[DIR]D084_190204L12_exp180712_MS63_30nM_AB20/2025-04-21 13:01 -  
[DIR]D085_190204L13_exp180712_MS01_AB21/2025-04-21 13:01 -  
[DIR]D086_190204L14_exp180712_MS80_AB21/2025-04-21 13:01 -  
[DIR]D087_190204L15_exp180712_MS81_AB21/2025-04-21 13:01 -  
[DIR]D088_190204L16_exp180712_MS63_0nM_AB21/2025-04-21 13:01 -  
[DIR]D089_190204L17_exp180712_MS63_10nM_AB21/2025-04-21 13:01 -  
[DIR]D090_190204L18_exp180712_MS63_30nM_AB21/2025-04-21 13:01 -  
[DIR]D091_190204L19_exp180712_MS01_AB36/2025-04-21 13:01 -  
[DIR]D092_190204L20_exp180712_MS80_AB36/2025-04-21 13:01 -  
[DIR]D093_190204L21_exp180712_MS81_AB36/2025-04-21 13:01 -  
[DIR]D094_190204L22_exp180712_MS63_0nM_AB36/2025-04-21 13:01 -  
[DIR]D095_190204L23_exp180712_MS63_10nM_AB36/2025-04-21 13:01 -  
[DIR]D096_190204L24_exp180712_MS63_30nM_AB36/2025-04-21 13:01 -  
[DIR]D097_190204L25_exp180712_MS01_AB37/2025-04-21 13:01 -  
[DIR]D098_190204L26_exp180712_MS80_AB37/2025-04-21 13:01 -  
[DIR]D099_190204L27_exp180712_MS81_AB37/2025-04-21 13:01 -  
[DIR]D100_190204L28_exp180712_MS63_0nM_AB37/2025-04-21 13:01 -  
[DIR]D101_190204L29_exp180712_MS63_10nM_AB37/2025-04-21 13:01 -  
[DIR]D102_190204L30_exp180712_MS63_30nM_AB37/2025-04-21 13:01 -  
[DIR]D103_190204L31_exp180712_MS01_AB38/2025-04-21 13:01 -  
[DIR]D104_190204L32_exp180712_MS80_AB38/2025-04-21 13:01 -  
[DIR]D105_190204L33_exp180712_MS81_AB38/2025-04-21 13:01 -  
[DIR]D106_190204L34_exp180712_MS63_0nM_AB38/2025-04-21 13:01 -  
[DIR]D107_190204L35_exp180712_MS63_10nM_AB38/2025-04-21 13:01 -  
[DIR]D108_190204L36_exp180712_MS63_30nM_AB38/2025-04-21 13:01 -  
[DIR]D109_190204L37_exp180712_MS01_AB40/2025-04-21 13:01 -  
[DIR]D110_190204L38_exp180712_MS80_AB40/2025-04-21 13:01 -  
[DIR]D111_190204L39_exp180712_MS81_AB40/2025-04-21 13:01 -  
[DIR]D112_190204L40_exp180712_MS63_0nM_AB40/2025-04-21 13:01 -  
[DIR]D113_190204L41_exp180712_MS63_10nM_AB40/2025-04-21 13:01 -  
[DIR]D114_190204L42_exp180712_MS63_30nM_AB40/2025-04-21 13:01 -  
[DIR]D115_190204L43_exp180712_MS01_AB46_R/2025-04-21 13:01 -  
[DIR]D116_190204L44_exp180712_MS80_AB46_R/2025-04-21 13:01 -  
[DIR]D117_190204L45_exp180712_MS81_AB46_R/2025-04-21 13:01 -  
[DIR]D118_190204L46_exp180712_MS63_0nM_AB46_R/2025-04-21 13:01 -  
[DIR]D119_190204L47_exp180712_MS63_10nM_AB46_R/2025-04-21 13:01 -  
[DIR]D120_190204L48_exp180712_MS63_30nM_AB46_R/2025-04-21 13:01 -  
[DIR]D121_190204L49_exp180712_MS01_AB48_R/2025-04-21 13:01 -  
[DIR]D122_190204L50_exp180712_MS80_AB48_R/2025-04-21 13:01 -  
[DIR]D123_190204L51_exp180712_MS81_AB48_R/2025-04-21 13:01 -  
[DIR]D124_190204L52_exp180712_MS63_0nM_AB48R_R/2025-04-21 13:01 -  
[DIR]D125_190204L53_exp180712_MS63_10nM_AB48_R/2025-04-21 13:01 -  
[DIR]D126_190204L54_exp180712_MS63_30nM_AB48_R/2025-04-21 13:01 -  
[TXT]PEInsertDistFromBAM.sh2021-07-17 15:16 39K 
[ ]RPM-RPKM-files.tar.gz2021-07-18 04:28 393M 
[ ]SAMstats.2x36mers.ERMTOC.table.gz2021-07-18 04:40 2.0K 
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[ ]SAMstats.files2021-07-18 04:39 53K 
[ ]SAMstats.nochrM.1x36mers.table.gz2021-07-18 04:40 1.5K 
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[TXT]SAMstats.sh2021-07-17 15:16 147K 
[ ]SAMstats.table.gz2021-07-18 04:40 4.6K 
[ ]SAMstats_files.tar.gz2021-07-18 04:41 15K 
[ ]TSS-250bp-350bp.Candida.RPKM.files2021-07-17 15:16 7.7K 
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[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-07-17 15:16 8.6K 
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[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-07-17 15:16 8.1K 
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[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-07-17 15:16 8.1K 
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table.gz2021-07-18 03:59 1.7M 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-07-17 15:16 8.9K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table.gz2021-07-18 03:59 1.7M 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-07-17 15:16 8.9K 
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table.gz2021-07-18 03:59 1.6M 
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2021-07-17 15:16 7.2K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-07-17 15:16 8.2K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-07-17 15:16 8.1K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-07-17 15:16 8.7K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-07-17 15:16 8.6K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-07-17 15:16 8.2K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.table.gz2021-07-18 03:59 2.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-07-17 15:16 8.1K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table.gz2021-07-18 03:59 2.3M 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-07-17 15:16 7.7K 
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[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-07-17 15:16 7.7K 
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table.gz2021-07-18 03:59 2.4M 
[ ]TSS-upstream500bp.Candida.RPKM.files2021-07-17 15:16 7.8K 
[ ]TSS-upstream500bp.Candida.RPKM.table.gz2021-07-18 03:59 1.6M 
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[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-07-17 15:16 8.7K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-07-17 15:16 8.3K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-07-17 15:16 8.8K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.table.gz2021-07-18 03:59 1.7M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-07-17 15:16 8.7K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-07-17 15:16 8.3K 
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[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-07-17 15:16 8.2K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.table.gz2021-07-18 03:59 2.3M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-07-17 15:16 7.8K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.table.gz2021-07-18 03:59 2.4M 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-07-17 15:16 7.8K 
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.table.gz2021-07-18 03:59 2.3M 
[TXT]bedRPKMfromBAM.sh2021-07-17 15:16 2.0M 
[TXT]columnrename.sh2021-07-17 15:16 38K 
[ ]commands.config2021-07-17 15:15 20K 
[TXT]countlines.sh2021-07-17 15:16 12K 
[ ]cumulativeGeneProfiles.Candida.500bp.smooth10.table.gz2021-07-18 03:19 952K 
[ ]cumulativeGeneProfiles.Candida.500bp.table.gz2021-07-18 03:19 897K 
[ ]cumulativeGeneProfiles.Candida.1000bp.smooth10.table.gz2021-07-18 03:21 1.8M 
[ ]cumulativeGeneProfiles.Candida.1000bp.table.gz2021-07-18 03:19 1.6M 
[ ]cumulativeGeneProfiles.Candida.files2021-07-17 15:16 7.4K 
[ ]cumulativeGeneProfiles.S_pombe.500bp.smooth10.table.gz2021-07-18 03:08 6.2K 
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[ ]cumulativeGeneProfiles.S_pombe.1000bp.smooth10.table.gz2021-07-18 03:08 12K 
[ ]cumulativeGeneProfiles.S_pombe.1000bp.table.gz2021-07-18 03:08 12K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.smooth10.table.gz2021-07-18 03:08 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.500bp.table.gz2021-07-18 03:08 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile1.1000bp.smooth10.table.gz2021-07-18 03:14 12K 
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[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.smooth10.table.gz2021-07-18 03:15 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.500bp.table.gz2021-07-18 03:14 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.smooth10.table.gz2021-07-18 03:15 12K 
[ ]cumulativeGeneProfiles.S_pombe.expression_quintile5.1000bp.table.gz2021-07-18 03:14 12K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.smooth10.table.gz2021-07-18 03:15 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.500bp.table.gz2021-07-18 03:15 6.2K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.smooth10.table.gz2021-07-18 03:15 12K 
[ ]cumulativeGeneProfiles.S_pombe.mRNA.1000bp.table.gz2021-07-18 03:15 12K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.smooth10.table.gz2021-07-18 03:20 956K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.500bp.table.gz2021-07-18 03:20 901K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.smooth10.table.gz2021-07-18 03:21 1.8M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.1000bp.table.gz2021-07-18 03:19 1.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.smooth10.table.gz2021-07-18 03:16 864K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.500bp.table.gz2021-07-18 03:18 770K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.smooth10.table.gz2021-07-18 03:17 1.5M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile1.1000bp.table.gz2021-07-18 03:15 1.3M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.smooth10.table.gz2021-07-18 03:16 863K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.500bp.table.gz2021-07-18 03:16 759K 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.smooth10.table.gz2021-07-18 03:18 1.6M 
[ ]cumulativeGeneProfiles.sacCer3.TIF-seq-updated.expression_quintile5.1000bp.table.gz2021-07-18 03:16 1.4M 
[ ]cumulativeGeneProfiles.sacCer3.files2021-07-17 15:16 5.9K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.smooth10.table.gz2021-07-18 03:19 908K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.500bp.table.gz2021-07-18 03:20 823K 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.smooth10.table.gz2021-07-18 03:20 1.7M 
[ ]cumulativeGeneProfiles.sacCer3.protein_coding.1000bp.table.gz2021-07-18 03:20 1.5M 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.smooth10.table.gz2021-07-18 03:13 57K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.500bp.table.gz2021-07-18 03:12 45K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.smooth10.table.gz2021-07-18 03:14 193K 
[ ]cumulativeGeneProfiles.sacCer3.rRNA.RDN37.1000bp.table.gz2021-07-18 03:12 153K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.smooth10.table.gz2021-07-18 03:23 951K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.500bp.table.gz2021-07-18 03:22 895K 
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[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.1000bp.table.gz2021-07-18 03:23 1.6M 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2021-07-17 15:16 7.6K 
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