Index of /kundaje/marinovg/oak/Stanford_bootcamp/2017/2021-05-26-ChIP-data-uniform-processing-last-batch-final-names

[ICO]NameLast modifiedSizeDescription
[PARENTDIR]Parent Directory  -  
[TXT]PEInsertDistFromBAM.sh2021-05-29 04:28 3.6K 
[TXT]SAMstats.sh2021-05-29 04:28 14K 
[ ]TSS-250bp-350bp.Candida.RPKM.files2021-05-29 04:28 752  
[ ]TSS-250bp-350bp.Candida.RPM.files2021-05-29 04:28 747  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 837  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 832  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 792  
[ ]TSS-250bp-350bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 787  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 867  
[ ]TSS-250bp-350bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 862  
[ ]TSS-250bp-350bp.sacCer3.RPKM.files2021-05-29 04:28 707  
[ ]TSS-250bp-350bp.sacCer3.RPM.files2021-05-29 04:28 702  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:28 797  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:28 792  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 842  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 837  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 797  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 792  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:28 752  
[ ]TSS-250bp-350bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:28 747  
[ ]TSS-upstream500bp.Candida.RPKM.files2021-05-29 04:28 762  
[ ]TSS-upstream500bp.Candida.RPM.files2021-05-29 04:28 757  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 847  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 842  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 802  
[ ]TSS-upstream500bp.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 797  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 877  
[ ]TSS-upstream500bp.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 872  
[ ]TSS-upstream500bp.sacCer3.RPKM.files2021-05-29 04:28 717  
[ ]TSS-upstream500bp.sacCer3.RPM.files2021-05-29 04:28 712  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:28 807  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:28 802  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 852  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 847  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 807  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 802  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:28 762  
[ ]TSS-upstream500bp.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:28 757  
[TXT]bedRPKMfromBAM.sh2021-05-29 04:28 193K 
[TXT]columnrename.sh2021-05-29 04:28 3.5K 
[ ]commands-last_small_batch.config2021-05-29 04:28 1.8K 
[TXT]countlines.sh2021-05-29 04:28 1.1K 
[ ]cumulativeGeneProfiles.Candida.files2021-05-29 04:28 727  
[ ]cumulativeGeneProfiles.sacCer3.files2021-05-29 04:28 577  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.Candida.files2021-05-29 04:28 737  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.smooth10.table2021-05-29 05:55 72K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.500bp.table2021-05-29 05:55 72K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.smooth10.table2021-05-29 05:55 145K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.TIF-seq-updated.1000bp.table2021-05-29 05:55 145K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.files2021-05-29 04:28 697  
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.smooth10.table2021-05-29 05:55 72K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.500bp.table2021-05-29 05:55 72K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.smooth10.table2021-05-29 05:55 145K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3-fullFragmentMidPoint.protein_coding.1000bp.table2021-05-29 05:55 145K 
[ ]cumulativeGeneProfiles.with_multimappers.nochrM.ERMTOC.sacCer3.files2021-05-29 04:28 587  
[TXT]filterchrM.sh2021-05-29 04:28 3.2K 
[ ]genes.Candida.RPKM.files2021-05-29 04:28 692  
[ ]genes.Candida.RPM.files2021-05-29 04:28 687  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 787  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 782  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 742  
[ ]genes.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 737  
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 817  
[ ]genes.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 812  
[ ]genes.sacCer3.RPKM.files2021-05-29 04:28 647  
[ ]genes.sacCer3.RPM.files2021-05-29 04:28 642  
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:28 737  
[ ]genes.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:28 732  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 782  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 777  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 737  
[ ]genes.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 732  
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:28 692  
[ ]genes.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:28 687  
[ ]genes_500bp_ext.Candida.RPKM.files2021-05-29 04:28 742  
[ ]genes_500bp_ext.Candida.RPM.files2021-05-29 04:28 737  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 837  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 832  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 792  
[ ]genes_500bp_ext.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 787  
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 867  
[ ]genes_500bp_ext.protein_coding.merged.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 862  
[ ]genes_500bp_ext.sacCer3.RPKM.files2021-05-29 04:28 697  
[ ]genes_500bp_ext.sacCer3.RPM.files2021-05-29 04:28 692  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPKM.files2021-05-29 04:28 787  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.Candida.RPM.files2021-05-29 04:28 782  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPKM.files2021-05-29 04:28 832  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.Candida.RPM.files2021-05-29 04:28 827  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPKM.files2021-05-29 04:28 787  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.fragmentMidPoint.sacCer3.RPM.files2021-05-29 04:28 782  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPKM.files2021-05-29 04:28 742  
[ ]genes_500bp_ext.with_multimappers.nochrM.ERMTOC.sacCer3.RPM.files2021-05-29 04:28 737  
[TXT]makewiggle.sh2021-05-29 04:28 18K 
[TXT]map.sh2021-05-29 04:28 9.6K 
[TXT]samtools-index.sh2021-05-29 04:28 2.7K 
[TXT]signalAroundCoordinate.sh2021-05-29 04:28 25K 
[TXT]wigtobigwig.sh2021-05-29 04:28 19K 
[ ]z2021-05-29 05:52 3.5K 
Apache/2.4.66 (Ubuntu) Server at mitra.stanford.edu Port 443